CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10026557m.g
(
Citrus clementina
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Ciclev10026557m.g
T286647_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN
NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.665
0.702
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.665
0.702
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.665
0.702
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10026557m
Myb
37
88
RRSWSAELHQLFLQALSHLGGSEVATPKLIKKIMNVDGLTNDEIKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Citrus clementina
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g048452m.g
Citrus sinensis
orange1.1g048452m.g
I
0.909
Ciclev10031793m.g
Citrus clementina
Ciclev10031793m.g
I
0.691
orange1.1g016585m.g
Citrus sinensis
orange1.1g016585m.g
I
0.691
Bo8g065380
Brassica oleracea
Bo8g065380
I
0.676
Bra016734
Brassica rapa
Bra016734
I
0.676
GSMUA_Achr6G09870_001
Musa acuminata
GSMUA_Achr6G09870_001
I
0.670
Lus10012056.g
Linum usitatissimum
Lus10012056.g
I
0.667
HRS1
Arabidopsis thaliana
AT1G13300
D
0.665
Bo5g015170
Brassica oleracea
Bo5g015170
I
0.665
Bra019824
Brassica rapa
Bra019824
I
0.665
Bostr.13671s0116
Boechera stricta
Bostr.13671s0116
I
0.665
Cagra.3501s0169
Capsella grandiflora
Cagra.3501s0169
I
0.665
Carubv10011925m.g
Capsella rubella
Carubv10011925m.g
I
0.665
Thhalv10008054m.g
Eutrema salsugineum
Thhalv10008054m.g
I
0.665
estExt_fgenesh1_pg.C_240109
Physcomitrella patens
estExt_fgenesh1_pg.C_240109
I
0.664
GLYMA10G34780
Glycine max
GLYMA10G34780
I
0.663
Gorai.007G053100
Gossypium raimondii
Gorai.007G053100
I
0.662