CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.contig_42663.2
(
Carica papaya
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
evm.TU.contig_42663.2
T287022_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB113
M07026_2.00
Arabidopsis thaliana
VTAACKRAHTH
DADTYMGTTAB
Dap-seq
OMalley et al.(2016)
MYB113_col_a
0.703
0.795
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_42663.2
Myb
9
56
KGAWTAEEDDRLRKCVEKYGEGKWHRVPFAAGLNRCRKSCRLRWLNYL
evm.TU.contig_42663.2
Myb
62
102
REKFTVDEVDLMMRMHKLLGNRWSLIAGRLPGRTANDIKNY
Links
Other
Myb/SANT
family TFs
Other
Carica papaya
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla023001
Citrullus lanatus
Cla023001
N
Cucsa.089670
Cucumis sativus
Cucsa.089670
N
Eucgr.D02099
Eucalyptus grandis
Eucgr.D02099
N
GLYMA08G03525
Glycine max
GLYMA08G03525
N
GLYMA08G44950
Glycine max
GLYMA08G44950
N
GLYMA14G10483
Glycine max
GLYMA14G10483
I
GLYMA18G32370
Glycine max
GLYMA18G32370
N
GRMZM2G305856
Zea mays
GRMZM2G305856
I
LjSGA_032074.1
Lotus japonicus
LjSGA_032074.1
N
LjSGA_067208.1
Lotus japonicus
LjSGA_067208.1
N
MDP0000244980
Malus domestica
MDP0000244980
N
MDP0000470422
Malus domestica
MDP0000470422
N
mgf024109m
Mimulus guttatus
mgf024109m
N
mgf026463m
Mimulus guttatus
mgf026463m
N
MLOC_67874
Hordeum vulgare
MLOC_67874
N
MYB21
Arabidopsis thaliana
AT3G27810
I
MYB27
Arabidopsis thaliana
AT3G53200
D
orange1.1g038824m.g
Citrus sinensis
orange1.1g038824m.g
N
Pavir.Ca00655
Panicum virgatum
Pavir.Ca00655
I
Pavir.Ga02684
Panicum virgatum
Pavir.Ga02684
I
Pavir.Gb01276
Panicum virgatum
Pavir.Gb01276
N
Pavir.Ia02093
Panicum virgatum
Pavir.Ia02093
N
Pavir.J36591
Panicum virgatum
Pavir.J36591
I
PDK_20s1376841g001
Phoenix dactylifera
PDK_20s1376841g001
N
PDK_20s1675721g001
Phoenix dactylifera
PDK_20s1675721g001
N
Pm005451
Prunus mume
Pm005451
N
SapurV1A.0004s0360
Salix purpurea
SapurV1A.0004s0360
I
Traes_5AL_D1807A4E0
Triticum aestivum
Traes_5AL_D1807A4E0
N