gene09039-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene09039-v1.0-hybrid T287270_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.730 0.774
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.707 0.785
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.691 0.720
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.686 0.753
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.686 0.753
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.686 0.753
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.684 0.785
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.684 0.785
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.684 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna09039.1-v1.0-hybrid Myb 37 83
mrna09039.1-v1.0-hybrid Myb 89 134

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.884
Pm005220 Prunus mume Pm005220 I 0.884
MDP0000894463 Malus domestica MDP0000894463 I 0.884
Cla021015 Citrullus lanatus Cla021015 I 0.875
MDP0000477900 Malus domestica MDP0000477900 I 0.858
MDP0000480596 Malus domestica MDP0000480596 I 0.858
MDP0000641708 Malus domestica MDP0000641708 I 0.858
MDP0000784297 Malus domestica MDP0000784297 I 0.858
MDP0000823270 Malus domestica MDP0000823270 I 0.858
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I 0.851
Cucsa.123440 Cucumis sativus Cucsa.123440 I 0.850
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.845
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.843
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.839
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I 0.834
30170.m013927 Ricinus communis 30170.m013927 I 0.834
cassava16103.m1 Manihot esculenta cassava16103.m1 I 0.834
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.834
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.834
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.825
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.824
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.814
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I 0.813
cassava46434.m1 Manihot esculenta cassava46434.m1 I 0.812
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.810
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.801
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.798
Cla022889 Citrullus lanatus Cla022889 I 0.798
Cucsa.232630 Cucumis sativus Cucsa.232630 I 0.798
TCM_033907 Theobroma cacao TCM_033907 I 0.794
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.793
Gorai.009G275100 Gossypium raimondii Gorai.009G275100 I 0.789
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.789
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.780
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.780
Ca_01522 Cicer arietinum Ca_01522 I 0.780
mgf006151m Mimulus guttatus mgf006151m I 0.771
GLYMA17G36370 Glycine max GLYMA17G36370 I 0.768
mgf003084m Mimulus guttatus mgf003084m I 0.768
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.764
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.758
mgf023922m Mimulus guttatus mgf023922m I 0.753
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.751
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.751
PK29071.1 Cannabis sativa PK29071.1 I 0.751
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.745
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.740
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.740
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.740
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.740
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.738
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.735
MTR_3g101290 Medicago truncatula MTR_3g101290 I 0.735
TCM_007138 Theobroma cacao TCM_007138 I 0.735
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.732
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.730
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.730
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.730
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.730
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.730
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.730
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.730
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.730
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.730
OS02G0187700 Oryza sativa OS02G0187700 D 0.730
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.730
Si017917m.g Setaria italica Si017917m.g I 0.730
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.730
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.730
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.729
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.726
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.726
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.723
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.718
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.717
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.716
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.716
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.716
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.714
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.713
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.713
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.713
30170.m013698 Ricinus communis 30170.m013698 I 0.710
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.710
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.710
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.710
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.710
PK17282.1 Cannabis sativa PK17282.1 I 0.710
MYB73 Arabidopsis thaliana AT4G37260 D 0.707
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.707
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.707
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.707
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.705
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.704
Bra007186 Brassica rapa Bra007186 I 0.703
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.701
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.701
Cla020946 Citrullus lanatus Cla020946 I 0.701
Pm005332 Prunus mume Pm005332 I 0.701
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.701
MDP0000463846 Malus domestica MDP0000463846 I 0.701
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.701
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.701
Bra001323 Brassica rapa Bra001323 I 0.700
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.700
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.700
Bo4g151410 Brassica oleracea Bo4g151410 I 0.698
Bra032176 Brassica rapa Bra032176 I 0.698
Cla014191 Citrullus lanatus Cla014191 I 0.698
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.698
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.698
MDP0000275800 Malus domestica MDP0000275800 I 0.697
Cla022947 Citrullus lanatus Cla022947 I 0.696
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.696
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.696
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.695
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.695
TCM_000696 Theobroma cacao TCM_000696 I 0.695
29970.m000987 Ricinus communis 29970.m000987 I 0.695
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.695
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.695
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.695
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.695
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.695
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.695
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.695
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.695
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.695
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.695
Bo8g090160 Brassica oleracea Bo8g090160 I 0.694
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.694
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.694
Si032789m.g Setaria italica Si032789m.g I 0.694
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.694
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.694
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.694
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.693
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.693
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.693
Si006938m.g Setaria italica Si006938m.g I 0.693
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.693
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.693
MYB1 Arabidopsis thaliana AT3G09230 D 0.691
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.690
Bo1g004900 Brassica oleracea Bo1g004900 I 0.690
Bo3g153550 Brassica oleracea Bo3g153550 I 0.690
Bra011749 Brassica rapa Bra011749 I 0.690
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.690
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.690
OB09G10200 Oryza brachyantha OB09G10200 I 0.690
OBART09G00310 Oryza barthii OBART09G00310 I 0.690
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.690
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.690
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.690
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.690
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.690
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.690
OS09G0106700 Oryza sativa OS09G0106700 I 0.690
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.690
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.690
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.690
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.690
29801.m003096 Ricinus communis 29801.m003096 I 0.689
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.689
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.688
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.688
mgf002573m Mimulus guttatus mgf002573m I 0.687
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.686
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.686
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.686
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.686
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.686
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.686
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.686
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.686
Ca_02182 Cicer arietinum Ca_02182 I 0.686
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.686
mgf020432m Mimulus guttatus mgf020432m I 0.686
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.686
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.686
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.686
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.686
MDP0000196986 Malus domestica MDP0000196986 I 0.686
MDP0000232454 Malus domestica MDP0000232454 I 0.686
PK28565.1 Cannabis sativa PK28565.1 D 0.686
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.686
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.685
MYB44 Arabidopsis thaliana AT5G67300 D 0.684
Bo4g025810 Brassica oleracea Bo4g025810 I 0.684
Bo7g063830 Brassica oleracea Bo7g063830 I 0.684
Bra012149 Brassica rapa Bra012149 I 0.684
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.684
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.684
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.684
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.684
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.684
MYB109 Arabidopsis thaliana AT3G55730 I 0.683
Bo7g118450 Brassica oleracea Bo7g118450 I 0.682
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.681
mgf025567m Mimulus guttatus mgf025567m I 0.680
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.680
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.680
Bra005006 Brassica rapa Bra005006 I 0.679
Bra010593 Brassica rapa Bra010593 I 0.679
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.679
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.679
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.679
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.679
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.678
TCM_042474 Theobroma cacao TCM_042474 I 0.677
Pm018951 Prunus mume Pm018951 I 0.677
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.676
29814.m000736 Ricinus communis 29814.m000736 I 0.676
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.676
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.676
PK01153.1 Cannabis sativa PK01153.1 I 0.676
Bo2g167960 Brassica oleracea Bo2g167960 I 0.675
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.675
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.675
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.675
Bo7g117880 Brassica oleracea Bo7g117880 I 0.674
Bra034057 Brassica rapa Bra034057 I 0.674
Ca_12468 Cicer arietinum Ca_12468 I 0.671
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.671
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.671
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.671
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.671
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.671
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.671
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.671
Bo7g099180 Brassica oleracea Bo7g099180 I 0.669
Bra012910 Brassica rapa Bra012910 I 0.669
MLOC_63964 Hordeum vulgare MLOC_63964 I 0.669
TRIUR3_25447 Triticum urartu TRIUR3_25447 I 0.669
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.669
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.668
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.667
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.667
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.667
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.667
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.667
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.665
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.665
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.665
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.664
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.664
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.664
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.664
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.663
Bo1g144680 Brassica oleracea Bo1g144680 I 0.662
Bra017813 Brassica rapa Bra017813 I 0.662
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.662
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.662
Bostr.6864s0236 Boechera stricta Bostr.6864s0236 I 0.662
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.662
MDP0000478512 Malus domestica MDP0000478512 I 0.662