gene10041-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene10041-v1.0-hybrid T287284_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR1
M02296_2.00 		Arabidopsis thaliana
NDGATHYBNN
NNVRDATCHN		 PBM
Weirauch et al.(2014)
pTH8257 		0.758 0.851
ARR1
M02297_2.00 		Arabidopsis thaliana
NAAGATHCKN
NMGDATCTTN		 PBM
Weirauch et al.(2014)
pTH8590 		0.725 0.809
ARR18
M02313_2.00 		Arabidopsis thaliana
NNNNAGATAYGNN
NNCRTATCTNNNN		 PBM
Weirauch et al.(2014)
pTH8840 		0.711 0.809
ARR10
M02702_2.00 		Arabidopsis thaliana
AGATHYKN
NMRDATCT		 SELEX
Mathelier et al.(2014)
MA0121.1 		0.700 0.745
ARR10
M11045_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ARR10_01 		0.700 0.745
estExt_fgenesh1_pg.C_Chr_16.00010090
M02367_2.00 		Ostreococcus tauri
NNNDATCN
NGATHNNN		 PBM
Weirauch et al.(2014)
pTH9644 		0.662 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna10041.1-v1.0-hybrid Myb 204 254

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I 0.811
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I 0.811
29848.m004559 Ricinus communis 29848.m004559 I 0.807
SELMODRAFT_444702 Selaginella moellendorffii SELMODRAFT_444702 I 0.792
SELMODRAFT_447635 Selaginella moellendorffii SELMODRAFT_447635 I 0.792
MTR_1g013180 Medicago truncatula MTR_1g013180 I 0.766
MTR_1g013170 Medicago truncatula MTR_1g013170 I 0.759
ARR1 Arabidopsis thaliana AT3G16857 D 0.758
Bo3g068550 Brassica oleracea Bo3g068550 I 0.758
Bo5g123620 Brassica oleracea Bo5g123620 I 0.758
Bra001643 Brassica rapa Bra001643 I 0.758
Bra022183 Brassica rapa Bra022183 I 0.758
Bostr.28625s0008 Boechera stricta Bostr.28625s0008 I 0.758
Cagra.5497s0018 Capsella grandiflora Cagra.5497s0018 I 0.758
Carubv10013107m.g Capsella rubella Carubv10013107m.g I 0.758
GSMUA_Achr11G08310_001 Musa acuminata GSMUA_Achr11G08310_001 I 0.753
Ca_09080 Cicer arietinum Ca_09080 I 0.747
Lus10005340.g Linum usitatissimum Lus10005340.g I 0.747
Lus10041020.g Linum usitatissimum Lus10041020.g I 0.747
estExt_Genewise1.C_90203 Chlorella NC64A estExt_Genewise1.C_90203 I 0.746
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I 0.744
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I 0.744
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.744
mgf001591m Mimulus guttatus mgf001591m I 0.744
mgf014863m Mimulus guttatus mgf014863m I 0.744
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.744
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.744
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.744
GSMUA_Achr9G16610_001 Musa acuminata GSMUA_Achr9G16610_001 I 0.743
Lus10016846.g Linum usitatissimum Lus10016846.g I 0.743
Lus10037719.g Linum usitatissimum Lus10037719.g I 0.743
CM1729.100.nc Lotus japonicus CM1729.100.nc I 0.741
Bostr.0556s0001 Boechera stricta Bostr.0556s0001 I 0.738
PDK_20s13009426g002 Phoenix dactylifera PDK_20s13009426g002 I 0.737
Lus10019058.g Linum usitatissimum Lus10019058.g I 0.732
PDK_20s1887621g001 Phoenix dactylifera PDK_20s1887621g001 I 0.732
GLYMA09G14650 Glycine max GLYMA09G14650 I 0.729
GLYMA15G24770 Glycine max GLYMA15G24770 I 0.729
TCM_037098 Theobroma cacao TCM_037098 I 0.729
29737.m001227 Ricinus communis 29737.m001227 I 0.729
cassava262.valid.m1 Manihot esculenta cassava262.valid.m1 I 0.729
Gorai.004G291100 Gossypium raimondii Gorai.004G291100 I 0.729
GRMZM2G360523 Zea mays GRMZM2G360523 I 0.727
PGSC0003DMG400007823 Solanum tuberosum PGSC0003DMG400007823 I 0.726
PRUPE_ppa018934mg Prunus persica PRUPE_ppa018934mg I 0.726
Solyc12g010330.1 Solanum lycopersicum Solyc12g010330.1 I 0.726
Pm027701 Prunus mume Pm027701 I 0.726
Bo1g055180 Brassica oleracea Bo1g055180 I 0.725
Bra033527 Brassica rapa Bra033527 I 0.725
ARR2 Arabidopsis lyrata scaffold_702902.1 I 0.725
Bostr.30275s0051 Boechera stricta Bostr.30275s0051 I 0.725
Cagra.0053s0018 Capsella grandiflora Cagra.0053s0018 I 0.725
Carubv10007581m.g Capsella rubella Carubv10007581m.g I 0.725
Thhalv10024686m.g Eutrema salsugineum Thhalv10024686m.g I 0.725
GLYMA04G06650 Glycine max GLYMA04G06650 I 0.717
GLYMA06G06730 Glycine max GLYMA06G06730 I 0.717
GLYMA14G13320 Glycine max GLYMA14G13320 I 0.717
PRUPE_ppa024819mg Prunus persica PRUPE_ppa024819mg I 0.717
VIT_04s0008g05900 Vitis vinifera VIT_04s0008g05900 I 0.717
Cla021325 Citrullus lanatus Cla021325 I 0.717
Pm005710 Prunus mume Pm005710 I 0.717
cassava18404.valid.m1 Manihot esculenta cassava18404.valid.m1 I 0.717
cassava18405.valid.m1 Manihot esculenta cassava18405.valid.m1 I 0.717
cassava8114.valid.m1 Manihot esculenta cassava8114.valid.m1 I 0.717
Cucsa.271670 Cucumis sativus Cucsa.271670 I 0.717
Aquca_016_00168 Aquilegia coerulea Aquca_016_00168 I 0.717
Ciclev10007639m.g Citrus clementina Ciclev10007639m.g I 0.717
Gorai.009G061000 Gossypium raimondii Gorai.009G061000 I 0.717
Lus10036303.g Linum usitatissimum Lus10036303.g I 0.717
orange1.1g005465m.g Citrus sinensis orange1.1g005465m.g I 0.717
SapurV1A.0730s0060 Salix purpurea SapurV1A.0730s0060 I 0.717
PDK_20s1342911g003 Phoenix dactylifera PDK_20s1342911g003 I 0.717
PDK_20s1782651g001 Phoenix dactylifera PDK_20s1782651g001 I 0.717
chr5.LjT32I14.90.nd Lotus japonicus chr5.LjT32I14.90.nd I 0.716
ARR18 Arabidopsis lyrata Al_scaffold_0008_2276 I 0.711
ARR18 Arabidopsis thaliana AT5G58080 D 0.711
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I 0.711
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I 0.711
Carubv10026052m.g Capsella rubella Carubv10026052m.g I 0.711
RR23 Oryza indica BGIOSGA005436 I 0.709
RR22 Oryza indica BGIOSGA022430 I 0.709
F775_14758 Aegilops tauschii F775_14758 I 0.709
F775_19079 Aegilops tauschii F775_19079 I 0.709
GRMZM2G409974 Zea mays GRMZM2G409974 I 0.709
GRMZM2G479110 Zea mays GRMZM2G479110 I 0.709
LPERR06G04900 Leersia perrieri LPERR06G04900 I 0.709
MLOC_11341 Hordeum vulgare MLOC_11341 I 0.709
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.709
OB02G42700 Oryza brachyantha OB02G42700 I 0.709
OB06G14930 Oryza brachyantha OB06G14930 I 0.709
OBART06G05360 Oryza barthii OBART06G05360 I 0.709
OGLUM06G05540 Oryza glumaepatula OGLUM06G05540 I 0.709
OMERI06G06380 Oryza meridionalis OMERI06G06380 I 0.709
ONIVA06G06160 Oryza nivara ONIVA06G06160 I 0.709
OPUNC06G05150 Oryza punctata OPUNC06G05150 I 0.709
ORGLA02G0311700 Oryza glaberrima ORGLA02G0311700 I 0.709
ORGLA06G0048800 Oryza glaberrima ORGLA06G0048800 I 0.709
ORUFI06G05490 Oryza rufipogon ORUFI06G05490 I 0.709
RR23 Oryza sativa OS02G0796500 I 0.709
RR22 Oryza sativa OS06G0183100 I 0.709
Sb04g035980 Sorghum bicolor Sb04g035980 I 0.709
Sb10g005580 Sorghum bicolor Sb10g005580 I 0.709
Si006013m.g Setaria italica Si006013m.g I 0.709
Si016546m.g Setaria italica Si016546m.g I 0.709
TCM_036926 Theobroma cacao TCM_036926 I 0.709
Traes_7AS_DECB8080D Triticum aestivum Traes_7AS_DECB8080D I 0.709
Traes_7DS_22DE624A5 Triticum aestivum Traes_7DS_22DE624A5 I 0.709
Traes_7DS_327FBC2CA Triticum aestivum Traes_7DS_327FBC2CA I 0.709
TRIUR3_26858 Triticum urartu TRIUR3_26858 I 0.709
TRIUR3_28229 Triticum urartu TRIUR3_28229 I 0.709
Pavir.Da02067 Panicum virgatum Pavir.Da02067 I 0.709
Pavir.J08270 Panicum virgatum Pavir.J08270 I 0.709
Pavir.J35630 Panicum virgatum Pavir.J35630 I 0.709
RR24 Oryza indica BGIOSGA007015 I 0.708
LPERR02G05460 Leersia perrieri LPERR02G05460 I 0.708
OB02G15530 Oryza brachyantha OB02G15530 I 0.708
OBART02G06200 Oryza barthii OBART02G06200 I 0.708
OGLUM02G06200 Oryza glumaepatula OGLUM02G06200 I 0.708
OLONG_007266 Oryza longistaminata OLONG_007266 I 0.708
OMERI02G07120 Oryza meridionalis OMERI02G07120 I 0.708
ONIVA02G07230 Oryza nivara ONIVA02G07230 I 0.708
ORGLA02G0057500 Oryza glaberrima ORGLA02G0057500 I 0.708
ORUFI02G06340 Oryza rufipogon ORUFI02G06340 I 0.708
RR24 Oryza sativa OS02G0182100 I 0.708
Sb05g004150 Sorghum bicolor Sb05g004150 I 0.706
Si007844m.g Setaria italica Si007844m.g I 0.706
Thhalv10020213m.g Eutrema salsugineum Thhalv10020213m.g I 0.705
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.704
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.704
Eucgr.C04050 Eucalyptus grandis Eucgr.C04050 I 0.704
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.704
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.704
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I 0.702
ARR10 Arabidopsis lyrata Al_scaffold_0007_907 I 0.700
ARR10 Arabidopsis thaliana AT4G31920 D 0.700
Bostr.7867s1047 Boechera stricta Bostr.7867s1047 I 0.700
Cagra.3807s0064 Capsella grandiflora Cagra.3807s0064 I 0.700
Carubv10004554m.g Capsella rubella Carubv10004554m.g I 0.700
Thhalv10024866m.g Eutrema salsugineum Thhalv10024866m.g I 0.700
PDK_20s1362511g001 Phoenix dactylifera PDK_20s1362511g001 I 0.699
Pavir.Db00757 Panicum virgatum Pavir.Db00757 N 0.695
Pavir.J10177 Panicum virgatum Pavir.J10177 N 0.695
Bo1g123000 Brassica oleracea Bo1g123000 I 0.694
Bo2g028820 Brassica oleracea Bo2g028820 I 0.693
Bra020390 Brassica rapa Bra020390 I 0.693
BRADI3G06120 Brachypodium distachyon BRADI3G06120 I 0.693
F775_13501 Aegilops tauschii F775_13501 I 0.693
GRMZM2G060485 Zea mays GRMZM2G060485 I 0.693
MLOC_3955 Hordeum vulgare MLOC_3955 I 0.693
Sb04g005580 Sorghum bicolor Sb04g005580 I 0.693
Si016630m.g Setaria italica Si016630m.g I 0.693
Traes_6AS_A42E71A00 Triticum aestivum Traes_6AS_A42E71A00 I 0.693
Traes_6BS_B50BEBC7E Triticum aestivum Traes_6BS_B50BEBC7E I 0.693
Traes_6DS_EF4A57213 Triticum aestivum Traes_6DS_EF4A57213 I 0.693
TRIUR3_31924 Triticum urartu TRIUR3_31924 I 0.693
Pavir.Aa03151 Panicum virgatum Pavir.Aa03151 I 0.693
Pavir.Ab00568 Panicum virgatum Pavir.Ab00568 I 0.693
Thhalv10015296m.g Eutrema salsugineum Thhalv10015296m.g I 0.693
chr6.CM0037.920.nc Lotus japonicus chr6.CM0037.920.nc I 0.693
chr5.CM0345.260.nd Lotus japonicus chr5.CM0345.260.nd I 0.691
OB06G30440 Oryza brachyantha OB06G30440 I 0.686
Traes_7AS_503B57D77 Triticum aestivum Traes_7AS_503B57D77 I 0.682
GRMZM2G401835 Zea mays GRMZM2G401835 I 0.681
AMTR_s00086p00182350 Amborella trichopoda AMTR_s00086p00182350 I 0.677
MTR_3g106220 Medicago truncatula MTR_3g106220 I 0.675
GLK2 Arabidopsis thaliana AT5G44190 I 0.674
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.674
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.674
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.674
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.674
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.674
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I 0.671
ARR1 Arabidopsis lyrata fgenesh2_kg.3__1853__AT3G16857.2 I 0.669
cassava37074.valid.m1 Manihot esculenta cassava37074.valid.m1 I 0.669
cassava37075.valid.m1 Manihot esculenta cassava37075.valid.m1 I 0.669
Gorai.001G030600 Gossypium raimondii Gorai.001G030600 I 0.669
Gorai.006G259700 Gossypium raimondii Gorai.006G259700 I 0.669
Bo7g104190 Brassica oleracea Bo7g104190 I 0.665
Bra012743 Brassica rapa Bra012743 I 0.665
GSMUA_Achr3G13400_001 Musa acuminata GSMUA_Achr3G13400_001 I 0.664
evm.TU.supercontig_127.10 Carica papaya evm.TU.supercontig_127.10 I 0.664
OSTLU_5500 Ostreococcus lucimarinus OSTLU_5500 I 0.662
e_gw1.1.649.1 Ostreococcus RCC809 e_gw1.1.649.1 I 0.662
EuGene.0000130210 Micromonas pusilla EuGene.0000130210 I 0.662
estExt_fgenesh2_pg.C_Chr_100175 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_100175 I 0.662
estExt_fgenesh1_pg.C_Chr_16.00010090 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_16.00010090 D 0.662