CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene10484-v1.0-hybrid
(
Fragaria vesca
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gene10484-v1.0-hybrid
T287287_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
APRR2
M02300_2.00
Arabidopsis thaliana
NNRNWATCNN
NNGATWNYNN
PBM
Weirauch et al.(2014)
pTH7102
0.890
0.936
GPRI1
M00874_2.00
Arabidopsis thaliana
NNDATHN
NDATHNN
PBM
Franco-Zorrilla et al.(2014)
GLK1
0.696
0.872
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna10484.1-v1.0-hybrid
Myb
325
375
KVDWTPELHKKFVHAVEQLGVDQAIPSRILELMKAEGLTRHNVASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Fragaria vesca
TFs
104 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa004161mg
Prunus persica
PRUPE_ppa004161mg
I
0.909
Pm014733
Prunus mume
Pm014733
I
0.909
Ciclev10031120m.g
Citrus clementina
Ciclev10031120m.g
I
0.909
orange1.1g008254m.g
Citrus sinensis
orange1.1g008254m.g
I
0.909
PK19826.1
Cannabis sativa
PK19826.1
I
0.909
Eucgr.E00308
Eucalyptus grandis
Eucgr.E00308
I
0.901
MDP0000237396
Malus domestica
MDP0000237396
I
0.895
APRR2
Arabidopsis thaliana
AT4G18020
D
0.890
APRR2
Arabidopsis lyrata
fgenesh2_kg.7__2503__AT4G18020.2
I
0.890
30054.m000786
Ricinus communis
30054.m000786
I
0.884
Cla008926
Citrullus lanatus
Cla008926
I
0.876
Cucsa.321580
Cucumis sativus
Cucsa.321580
I
0.876
Bo1g019180
Brassica oleracea
Bo1g019180
I
0.868
Bo7g105690
Brassica oleracea
Bo7g105690
I
0.868
Bra012623
Brassica rapa
Bra012623
I
0.868
Bra013277
Brassica rapa
Bra013277
I
0.868
Bra013278
Brassica rapa
Bra013278
I
0.868
Bra013279
Brassica rapa
Bra013279
I
0.868
Bostr.30275s0270
Boechera stricta
Bostr.30275s0270
I
0.868
Thhalv10024919m.g
Eutrema salsugineum
Thhalv10024919m.g
I
0.868
TCM_015780
Theobroma cacao
TCM_015780
I
0.860
cassava2466.valid.m1
Manihot esculenta
cassava2466.valid.m1
I
0.857
Lus10011044.g
Linum usitatissimum
Lus10011044.g
I
0.857
APRR2
Vitis vinifera
VIT_02s0012g00570
I
0.856
Aquca_044_00072
Aquilegia coerulea
Aquca_044_00072
I
0.852
evm.TU.supercontig_6.428
Carica papaya
evm.TU.supercontig_6.428
I
0.849
MDP0000248863
Malus domestica
MDP0000248863
I
0.845
PDK_20s1585631g001
Phoenix dactylifera
PDK_20s1585631g001
I
0.842
SapurV1A.1296s0050
Salix purpurea
SapurV1A.1296s0050
I
0.838
Lus10040109.g
Linum usitatissimum
Lus10040109.g
I
0.836
SapurV1A.0132s0010
Salix purpurea
SapurV1A.0132s0010
I
0.831
Ca_02285
Cicer arietinum
Ca_02285
I
0.820
Gorai.008G228800
Gossypium raimondii
Gorai.008G228800
I
0.820
POPTR_0001s02910
Populus trichocarpa
POPTR_0001s02910
I
0.813
PGSC0003DMG400024217
Solanum tuberosum
PGSC0003DMG400024217
I
0.812
Solyc08g077230.2
Solanum lycopersicum
Solyc08g077230.2
I
0.812
Ca_12825
Cicer arietinum
Ca_12825
I
0.812
chr4.CM0831.100.nd
Lotus japonicus
chr4.CM0831.100.nd
I
0.812
GLYMA17G16360
Glycine max
GLYMA17G16360
I
0.808
MTR_4g098870
Medicago truncatula
MTR_4g098870
I
0.805
GLYMA01G40900
Glycine max
GLYMA01G40900
I
0.802
GLYMA11G04441
Glycine max
GLYMA11G04441
I
0.802
SELMODRAFT_428906
Selaginella moellendorffii
SELMODRAFT_428906
I
0.802
chr2.CM0021.770.nc
Lotus japonicus
chr2.CM0021.770.nc
I
0.802
Cagra.1595s0002
Capsella grandiflora
Cagra.1595s0002
I
0.801
Carubv10004540m.g
Capsella rubella
Carubv10004540m.g
I
0.801
POPTR_0003s08600
Populus trichocarpa
POPTR_0003s08600
I
0.795
Lus10003013.g
Linum usitatissimum
Lus10003013.g
I
0.795
cassava42047.valid.m1
Manihot esculenta
cassava42047.valid.m1
I
0.794
cassava42048.valid.m1
Manihot esculenta
cassava42048.valid.m1
I
0.794
MTR_5g014040
Medicago truncatula
MTR_5g014040
I
0.786
Gorai.004G188300
Gossypium raimondii
Gorai.004G188300
I
0.786
Gorai.003G180100
Gossypium raimondii
Gorai.003G180100
I
0.780
GLYMA05G06070
Glycine max
GLYMA05G06070
I
0.771
AMTR_s00149p00035260
Amborella trichopoda
AMTR_s00149p00035260
I
0.753
Ca_24009
Cicer arietinum
Ca_24009
I
0.753
Cla016403
Citrullus lanatus
Cla016403
I
0.746
GSMUA_Achr11G17740_001
Musa acuminata
GSMUA_Achr11G17740_001
I
0.738
Lus10030938.g
Linum usitatissimum
Lus10030938.g
I
0.734
PGSC0003DMG400026587
Solanum tuberosum
PGSC0003DMG400026587
I
0.732
Solyc06g061030.2
Solanum lycopersicum
Solyc06g061030.2
I
0.732
Cucsa.313480
Cucumis sativus
Cucsa.313480
I
0.732
GLK2
Arabidopsis thaliana
AT5G44190
I
0.726
fgenesh2_kg.8__391__AT5G44190.1
Arabidopsis lyrata
fgenesh2_kg.8__391__AT5G44190.1
I
0.726
Bostr.3148s0040
Boechera stricta
Bostr.3148s0040
I
0.726
Cagra.0381s0008
Capsella grandiflora
Cagra.0381s0008
I
0.726
Carubv10026528m.g
Capsella rubella
Carubv10026528m.g
I
0.726
Thhalv10003223m.g
Eutrema salsugineum
Thhalv10003223m.g
I
0.726
Eucgr.K01056
Eucalyptus grandis
Eucgr.K01056
I
0.722
GSMUA_Achr2G18200_001
Musa acuminata
GSMUA_Achr2G18200_001
I
0.700
GPRI1
Arabidopsis thaliana
AT2G20570
D
0.696
GPRI1
Arabidopsis lyrata
fgenesh2_kg.3__3588__AT2G20570.1
I
0.696
Cla003791
Citrullus lanatus
Cla003791
I
0.696
Cucsa.087530
Cucumis sativus
Cucsa.087530
I
0.696
Bostr.7903s0106
Boechera stricta
Bostr.7903s0106
I
0.696
Cagra.2516s0014
Capsella grandiflora
Cagra.2516s0014
I
0.696
Carubv10014114m.g
Capsella rubella
Carubv10014114m.g
I
0.696
Lus10018649.g
Linum usitatissimum
Lus10018649.g
I
0.696
Lus10033642.g
Linum usitatissimum
Lus10033642.g
I
0.696
Lus10039883.g
Linum usitatissimum
Lus10039883.g
I
0.696
mgf007181m
Mimulus guttatus
mgf007181m
I
0.693
mgf012846m
Mimulus guttatus
mgf012846m
I
0.693
AMTR_s00058p00133630
Amborella trichopoda
AMTR_s00058p00133630
I
0.675
POPTR_0007s01230
Populus trichocarpa
POPTR_0007s01230
I
0.675
POPTR_0017s04720
Populus trichocarpa
POPTR_0017s04720
I
0.675
PRUPE_ppa014599mg
Prunus persica
PRUPE_ppa014599mg
I
0.675
TCM_008193
Theobroma cacao
TCM_008193
I
0.675
Pm014123
Prunus mume
Pm014123
I
0.675
29983.m003131
Ricinus communis
29983.m003131
I
0.675
cassava43649.valid.m1
Manihot esculenta
cassava43649.valid.m1
I
0.675
cassava43650.valid.m1
Manihot esculenta
cassava43650.valid.m1
I
0.675
Ciclev10015266m.g
Citrus clementina
Ciclev10015266m.g
I
0.675
gene17750-v1.0-hybrid
Fragaria vesca
gene17750-v1.0-hybrid
I
0.675
Gorai.002G020300
Gossypium raimondii
Gorai.002G020300
I
0.675
Gorai.012G126600
Gossypium raimondii
Gorai.012G126600
I
0.675
MDP0000225179
Malus domestica
MDP0000225179
I
0.675
MDP0000526864
Malus domestica
MDP0000526864
I
0.675
orange1.1g013528m.g
Citrus sinensis
orange1.1g013528m.g
I
0.675
SapurV1A.0118s0260
Salix purpurea
SapurV1A.0118s0260
I
0.675
SapurV1A.0693s0070
Salix purpurea
SapurV1A.0693s0070
I
0.675
SapurV1A.1950s0030
Salix purpurea
SapurV1A.1950s0030
I
0.675
PK27491.1
Cannabis sativa
PK27491.1
I
0.675
Bo7g067200
Brassica oleracea
Bo7g067200
I
0.664
Bra033726
Brassica rapa
Bra033726
I
0.664