CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene12261-v1.0-hybrid
(
Fragaria vesca
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gene12261-v1.0-hybrid
T287292_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna12261.1-v1.0-hybrid
Myb
11
58
KGPWKAEEDQVLLNHVKKCGPKDWSSIRSKGLLQRTGKSCRLRWVNKL
mrna12261.1-v1.0-hybrid
Myb
65
109
GCKFSLEEERVVIELQAQFGNKWAKIATHLAGRTDNDVKNFWSSR
Links
Other
Myb/SANT
family TFs
Other
Fragaria vesca
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene04800-v1.0-hybrid
Fragaria vesca
gene04800-v1.0-hybrid
N
0.892
Pm017596
Prunus mume
Pm017596
N
0.861
MDP0000237596
Malus domestica
MDP0000237596
N
0.846
MDP0000319634
Malus domestica
MDP0000319634
N
0.846
TCM_005653
Theobroma cacao
TCM_005653
N
0.843
30174.m008784
Ricinus communis
30174.m008784
N
0.843
evm.TU.supercontig_37.96
Carica papaya
evm.TU.supercontig_37.96
N
0.843
Eucgr.E01581
Eucalyptus grandis
Eucgr.E01581
N
0.842
PRUPE_ppa020326mg
Prunus persica
PRUPE_ppa020326mg
N
0.839
GLYMA03G26830
Glycine max
GLYMA03G26830
N
0.836
Ciclev10021345m.g
Citrus clementina
Ciclev10021345m.g
N
0.836
orange1.1g038795m.g
Citrus sinensis
orange1.1g038795m.g
N
0.836
LjT36B17.50.nd
Lotus japonicus
LjT36B17.50.nd
N
0.830
GLYMA07G14480
Glycine max
GLYMA07G14480
N
0.827
DUO1
Vitis vinifera
VIT_15s0021g02040
N
0.819
MTR_4g029540
Medicago truncatula
MTR_4g029540
N
0.814
POPTR_0002s14180
Populus trichocarpa
POPTR_0002s14180
N
0.813
SapurV1A.0033s0200
Salix purpurea
SapurV1A.0033s0200
N
0.813
Solyc01g090530.1
Solanum lycopersicum
Solyc01g090530.1
N
0.806
PGSC0003DMG400025720
Solanum tuberosum
PGSC0003DMG400025720
N
0.802
mgf019330m
Mimulus guttatus
mgf019330m
N
0.802
MTR_8g006470
Medicago truncatula
MTR_8g006470
N
0.801
Cla006831
Citrullus lanatus
Cla006831
N
0.799
cassava17368.m1
Manihot esculenta
cassava17368.m1
N
0.799
BGIOSGA016880
Oryza indica
BGIOSGA016880
N
0.798
OB04G27810
Oryza brachyantha
OB04G27810
N
0.798
OBART04G20790
Oryza barthii
OBART04G20790
N
0.798
OGLUM04G20730
Oryza glumaepatula
OGLUM04G20730
N
0.798
OMERI04G17240
Oryza meridionalis
OMERI04G17240
N
0.798
ONIVA04G19030
Oryza nivara
ONIVA04G19030
N
0.798
OPUNC04G18480
Oryza punctata
OPUNC04G18480
N
0.798
ORGLA04G0178400
Oryza glaberrima
ORGLA04G0178400
N
0.798
ORUFI04G22380
Oryza rufipogon
ORUFI04G22380
N
0.798
Pavir.Fb01900
Panicum virgatum
Pavir.Fb01900
N
0.798
Gorai.004G165400
Gossypium raimondii
Gorai.004G165400
N
0.796
Si012032m.g
Setaria italica
Si012032m.g
N
0.795
Pavir.Gb01130
Panicum virgatum
Pavir.Gb01130
N
0.795
Pavir.J30013
Panicum virgatum
Pavir.J30013
N
0.795
Pavir.J35399
Panicum virgatum
Pavir.J35399
N
0.795
SapurV1A.0490s0170
Salix purpurea
SapurV1A.0490s0170
N
0.791
PRUPE_ppa016603mg
Prunus persica
PRUPE_ppa016603mg
N
0.790
Pm019530
Prunus mume
Pm019530
N
0.790
Pm031387
Prunus mume
Pm031387
N
0.790
Solyc10g019260.1
Solanum lycopersicum
Solyc10g019260.1
N
0.786
Traes_2AL_0A21FB42C
Triticum aestivum
Traes_2AL_0A21FB42C
N
0.784
Traes_2BL_855A1170C
Triticum aestivum
Traes_2BL_855A1170C
N
0.784
POPTR_0014s05370
Populus trichocarpa
POPTR_0014s05370
N
0.783
POPTR_0014s05420
Populus trichocarpa
POPTR_0014s05420
N
0.783
Cagra.3527s0008
Capsella grandiflora
Cagra.3527s0008
N
0.783
Carubv10019483m.g
Capsella rubella
Carubv10019483m.g
N
0.783
GRMZM2G105137
Zea mays
GRMZM2G105137
N
0.779
Bo8g095200
Brassica oleracea
Bo8g095200
N
0.770
Bra007536
Brassica rapa
Bra007536
N
0.770
Lus10009780.g
Linum usitatissimum
Lus10009780.g
N
0.770
cassava19913.m1
Manihot esculenta
cassava19913.m1
N
0.769
Bo6g077030
Brassica oleracea
Bo6g077030
N
0.768
Cucsa.121070
Cucumis sativus
Cucsa.121070
N
0.766
Aquca_081_00025
Aquilegia coerulea
Aquca_081_00025
N
0.762
DUO1
Arabidopsis thaliana
AT3G60460
N
0.759
Bra003413
Brassica rapa
Bra003413
N
0.759
DUO1
Arabidopsis lyrata
fgenesh2_kg.5__2511__AT3G60460.1
N
0.759
Bostr.13158s0042
Boechera stricta
Bostr.13158s0042
N
0.759
Traes_2DL_912473A86
Triticum aestivum
Traes_2DL_912473A86
N
0.758
Ca_19557
Cicer arietinum
Ca_19557
N
0.756
Ca_18954
Cicer arietinum
Ca_18954
N
0.755
BRADI5G17600
Brachypodium distachyon
BRADI5G17600
N
0.754
Sb06g024510
Sorghum bicolor
Sb06g024510
N
0.751
Aquca_002_00029
Aquilegia coerulea
Aquca_002_00029
N
0.749
Sb07g027160
Sorghum bicolor
Sb07g027160
N
0.747
Si015815m.g
Setaria italica
Si015815m.g
N
0.747
Cla010897
Citrullus lanatus
Cla010897
N
0.747
Pavir.Fa00479
Panicum virgatum
Pavir.Fa00479
N
0.747
Thhalv10006475m.g
Eutrema salsugineum
Thhalv10006475m.g
N
0.743
TCM_014872
Theobroma cacao
TCM_014872
N
0.742
GLYMA09G00371
Glycine max
GLYMA09G00371
N
0.741
GRMZM2G311059
Zea mays
GRMZM2G311059
N
0.741
GLYMA12G37026
Glycine max
GLYMA12G37026
N
0.738
GRMZM2G046443
Zea mays
GRMZM2G046443
N
0.730
Cucsa.094180
Cucumis sativus
Cucsa.094180
N
0.723
GSMUA_Achr1G01660_001
Musa acuminata
GSMUA_Achr1G01660_001
N
0.706
mgf004314m
Mimulus guttatus
mgf004314m
N
0.706
Bostr.13158s0046
Boechera stricta
Bostr.13158s0046
N
0.690
Gorai.003G112700
Gossypium raimondii
Gorai.003G112700
N
0.684
AMTR_s00111p00072510
Amborella trichopoda
AMTR_s00111p00072510
N
0.681