CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.003G180100
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.003G180100
T287523_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
APRR2
M02300_2.00
Arabidopsis thaliana
NNRNWATCNN
NNGATWNYNN
PBM
Weirauch et al.(2014)
pTH7102
0.762
0.894
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.003G180100.1
Myb
333
383
KVDWTPELHKKFVQAVDQLGIDQAIPSRILELMEVEGLTRHNVASHLQKYR
Gorai.003G180100.2
Myb
303
353
KVDWTPELHKKFVQAVDQLGIDQAIPSRILELMEVEGLTRHNVASHLQKYR
Gorai.003G180100.3
Myb
303
353
KVDWTPELHKKFVQAVDQLGIDQAIPSRILELMEVEGLTRHNVASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30054.m000786
Ricinus communis
30054.m000786
I
0.755
AMTR_s00149p00035260
Amborella trichopoda
AMTR_s00149p00035260
I
0.803
APRR2
Arabidopsis thaliana
AT4G18020
D
0.762
APRR2
Vitis vinifera
VIT_02s0012g00570
I
0.727
APRR2
Arabidopsis lyrata
fgenesh2_kg.7__2503__AT4G18020.2
I
0.762
Aquca_044_00072
Aquilegia coerulea
Aquca_044_00072
I
0.723
Bo1g019180
Brassica oleracea
Bo1g019180
I
0.739
Bo7g105690
Brassica oleracea
Bo7g105690
I
0.739
Bostr.30275s0270
Boechera stricta
Bostr.30275s0270
I
0.739
Bra012623
Brassica rapa
Bra012623
I
0.739
Bra013277
Brassica rapa
Bra013277
I
0.739
Bra013278
Brassica rapa
Bra013278
I
0.739
Bra013279
Brassica rapa
Bra013279
I
0.739
Bra036015
Brassica rapa
Bra036015
I
0.677
BRADI2G08287
Brachypodium distachyon
BRADI2G08287
I
0.675
Cagra.1595s0002
Capsella grandiflora
Cagra.1595s0002
I
0.851
Carubv10004540m.g
Capsella rubella
Carubv10004540m.g
I
0.851
cassava2466.valid.m1
Manihot esculenta
cassava2466.valid.m1
I
0.728
cassava42047.valid.m1
Manihot esculenta
cassava42047.valid.m1
I
0.843
cassava42048.valid.m1
Manihot esculenta
cassava42048.valid.m1
I
0.843
Ca_02285
Cicer arietinum
Ca_02285
I
0.870
Ca_12825
Cicer arietinum
Ca_12825
I
0.861
Ca_24009
Cicer arietinum
Ca_24009
I
0.802
chr2.CM0021.770.nc
Lotus japonicus
chr2.CM0021.770.nc
I
0.852
chr4.CM0831.100.nd
Lotus japonicus
chr4.CM0831.100.nd
I
0.861
Ciclev10031120m.g
Citrus clementina
Ciclev10031120m.g
I
0.780
Cla008926
Citrullus lanatus
Cla008926
I
0.747
Cla016403
Citrullus lanatus
Cla016403
I
0.796
Cucsa.313480
Cucumis sativus
Cucsa.313480
I
0.782
Cucsa.321580
Cucumis sativus
Cucsa.321580
I
0.747
Eucgr.E00308
Eucalyptus grandis
Eucgr.E00308
I
0.772
evm.TU.supercontig_6.428
Carica papaya
evm.TU.supercontig_6.428
I
0.720
gene10484-v1.0-hybrid
Fragaria vesca
gene10484-v1.0-hybrid
I
0.780
GLK2
Oryza sativa
OS01G0239000
I
0.675
GLYMA01G40900
Glycine max
GLYMA01G40900
I
0.852
GLYMA05G06070
Glycine max
GLYMA05G06070
I
0.821
GLYMA11G04441
Glycine max
GLYMA11G04441
I
0.852
GLYMA17G16360
Glycine max
GLYMA17G16360
I
0.858
Gorai.004G188300
Gossypium raimondii
Gorai.004G188300
I
0.835
Gorai.008G228800
Gossypium raimondii
Gorai.008G228800
I
0.870
GSMUA_Achr10G26160_001
Musa acuminata
GSMUA_Achr10G26160_001
I
0.675
GSMUA_Achr11G17740_001
Musa acuminata
GSMUA_Achr11G17740_001
I
0.787
GSMUA_Achr2G15250_001
Musa acuminata
GSMUA_Achr2G15250_001
I
0.696
GSMUA_Achr2G18200_001
Musa acuminata
GSMUA_Achr2G18200_001
I
0.750
GSMUA_Achr7G11040_001
Musa acuminata
GSMUA_Achr7G11040_001
I
0.675
LPERR01G08320
Leersia perrieri
LPERR01G08320
I
0.675
Lus10003013.g
Linum usitatissimum
Lus10003013.g
I
0.667
Lus10011044.g
Linum usitatissimum
Lus10011044.g
I
0.728
Lus10040109.g
Linum usitatissimum
Lus10040109.g
I
0.708
MDP0000237396
Malus domestica
MDP0000237396
I
0.766
MDP0000248863
Malus domestica
MDP0000248863
I
0.717
MTR_4g098870
Medicago truncatula
MTR_4g098870
I
0.854
MTR_5g014040
Medicago truncatula
MTR_5g014040
I
0.835
OGLUM01G10130
Oryza glumaepatula
OGLUM01G10130
I
0.675
OMERI01G08840
Oryza meridionalis
OMERI01G08840
I
0.675
ONIVA01G11450
Oryza nivara
ONIVA01G11450
I
0.675
OPUNC01G08680
Oryza punctata
OPUNC01G08680
I
0.675
orange1.1g008254m.g
Citrus sinensis
orange1.1g008254m.g
I
0.780
ORUFI01G09620
Oryza rufipogon
ORUFI01G09620
I
0.675
PDK_20s1585631g001
Phoenix dactylifera
PDK_20s1585631g001
I
0.713
PGSC0003DMG400024217
Solanum tuberosum
PGSC0003DMG400024217
I
0.861
PGSC0003DMG400026587
Solanum tuberosum
PGSC0003DMG400026587
I
0.782
PK19826.1
Cannabis sativa
PK19826.1
I
0.780
Pm014733
Prunus mume
Pm014733
I
0.780
POPTR_0001s02910
Populus trichocarpa
POPTR_0001s02910
I
0.684
POPTR_0003s08600
Populus trichocarpa
POPTR_0003s08600
I
0.666
PRUPE_ppa004161mg
Prunus persica
PRUPE_ppa004161mg
I
0.780
SapurV1A.0132s0010
Salix purpurea
SapurV1A.0132s0010
I
0.702
SapurV1A.1296s0050
Salix purpurea
SapurV1A.1296s0050
I
0.709
SELMODRAFT_428906
Selaginella moellendorffii
SELMODRAFT_428906
I
0.712
Si001336m.g
Setaria italica
Si001336m.g
I
0.668
Solyc06g061030.2
Solanum lycopersicum
Solyc06g061030.2
I
0.782
Solyc08g077230.2
Solanum lycopersicum
Solyc08g077230.2
I
0.861
TCM_015780
Theobroma cacao
TCM_015780
I
0.731
Thhalv10024919m.g
Eutrema salsugineum
Thhalv10024919m.g
I
0.739