CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.004G226000
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.004G226000
T287553_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.004G226000.1
Myb
1106
1156
GSPWSLLEDQALVVLVHDMGPNWQLVSDAINSTLQFKCIFRKPNECKERHK
Gorai.004G226000.2
Myb
1105
1155
GSPWSLLEDQALVVLVHDMGPNWQLVSDAINSTLQFKCIFRKPNECKERHK
Gorai.004G226000.3
Myb
1105
1155
GSPWSLLEDQALVVLVHDMGPNWQLVSDAINSTLQFKCIFRKPNECKERHK
Gorai.004G226000.4
Myb
1105
1155
GSPWSLLEDQALVVLVHDMGPNWQLVSDAINSTLQFKCIFRKPNECKERHK
Gorai.004G226000.8
Myb
1105
1155
GSPWSLLEDQALVVLVHDMGPNWQLVSDAINSTLQFKCIFRKPNECKERHK
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PK23540.1
Cannabis sativa
PK23540.1
N
0.896
GLYMA08G46710
Glycine max
GLYMA08G46710
N
0.855
POPTR_0014s19020
Populus trichocarpa
POPTR_0014s19020
N
0.855
cassava349.valid.m1
Manihot esculenta
cassava349.valid.m1
N
0.855
gene17608-v1.0-hybrid
Fragaria vesca
gene17608-v1.0-hybrid
N
0.855
Gorai.007G155000
Gossypium raimondii
Gorai.007G155000
N
0.855
MDP0000155726
Malus domestica
MDP0000155726
N
0.855
MDP0000250529
Malus domestica
MDP0000250529
N
0.855
SapurV1A.0342s0100
Salix purpurea
SapurV1A.0342s0100
N
0.855
Solyc06g083420.1
Solanum lycopersicum
Solyc06g083420.1
N
0.851
GLYMA18G36628
Glycine max
GLYMA18G36628
N
0.845
Ciclev10018446m.g
Citrus clementina
Ciclev10018446m.g
N
0.845
orange1.1g000147m.g
Citrus sinensis
orange1.1g000147m.g
N
0.845
Cla015187
Citrullus lanatus
Cla015187
N
0.843
Cucsa.078210
Cucumis sativus
Cucsa.078210
N
0.843
POPTR_0002s24490
Populus trichocarpa
POPTR_0002s24490
N
0.833
SapurV1A.0135s0340
Salix purpurea
SapurV1A.0135s0340
N
0.833
chr1.LjT36F23.70.nd
Lotus japonicus
chr1.LjT36F23.70.nd
N
0.833
fgenesh2_kg.3__2706__AT3G24880.1
Arabidopsis lyrata
fgenesh2_kg.3__2706__AT3G24880.1
N
0.832
Bostr.19424s0133
Boechera stricta
Bostr.19424s0133
N
0.832
PRUPE_ppa000065mg
Prunus persica
PRUPE_ppa000065mg
N
0.831
Pm020347
Prunus mume
Pm020347
N
0.831
Eucgr.H00795
Eucalyptus grandis
Eucgr.H00795
N
0.829
Gorai.001G187100
Gossypium raimondii
Gorai.001G187100
N
0.824
TCM_002924
Theobroma cacao
TCM_002924
N
0.822
Lus10011850.g
Linum usitatissimum
Lus10011850.g
N
0.822
Lus10022788.g
Linum usitatissimum
Lus10022788.g
N
0.822
evm.TU.supercontig_8.144
Carica papaya
evm.TU.supercontig_8.144
N
0.814
MTR_7g056603
Medicago truncatula
MTR_7g056603
N
0.812
EAF1B
Arabidopsis thaliana
AT3G24870
N
0.810
EAF1A
Arabidopsis thaliana
AT3G24880
N
0.810
Thhalv10002368m.g
Eutrema salsugineum
Thhalv10002368m.g
N
0.810
GLYMA03G18725
Glycine max
GLYMA03G18725
N
0.802
GLYMA16G14060
Glycine max
GLYMA16G14060
N
0.802
30204.m001750
Ricinus communis
30204.m001750
N
0.802
Bo7g031610
Brassica oleracea
Bo7g031610
N
0.789
GSMUA_Achr1G21080_001
Musa acuminata
GSMUA_Achr1G21080_001
N
0.788
Carubv10015863m.g
Capsella rubella
Carubv10015863m.g
N
0.785
Bo3g083740
Brassica oleracea
Bo3g083740
N
0.778
Bra013238
Brassica rapa
Bra013238
N
0.778
Solyc09g060080.2
Solanum lycopersicum
Solyc09g060080.2
N
0.773
Eucgr.K02162
Eucalyptus grandis
Eucgr.K02162
N
0.763
Bostr.2021s0055
Boechera stricta
Bostr.2021s0055
N
0.757
AMTR_s00045p00026940
Amborella trichopoda
AMTR_s00045p00026940
N
0.746
Gorai.001G233800
Gossypium raimondii
Gorai.001G233800
N
0.742
AMTR_s00029p00248140
Amborella trichopoda
AMTR_s00029p00248140
N
0.738
GSMUA_Achr11G13340_001
Musa acuminata
GSMUA_Achr11G13340_001
N
0.735
PDK_20s1355591g002
Phoenix dactylifera
PDK_20s1355591g002
N
0.734
Carubv10016123m.g
Capsella rubella
Carubv10016123m.g
N
0.732
VIT_07s0005g06680
Vitis vinifera
VIT_07s0005g06680
N
0.731
Sb03g025920
Sorghum bicolor
Sb03g025920
N
0.716
Si000015m.g
Setaria italica
Si000015m.g
N
0.716
Pavir.J18859
Panicum virgatum
Pavir.J18859
N
0.716
Bo4g133290
Brassica oleracea
Bo4g133290
N
0.698
Bra032689
Brassica rapa
Bra032689
N
0.698
BGIOSGA027556
Oryza indica
BGIOSGA027556
N
0.694
OB01G30180
Oryza brachyantha
OB01G30180
N
0.694
OBART08G04660
Oryza barthii
OBART08G04660
N
0.694
OGLUM08G04910
Oryza glumaepatula
OGLUM08G04910
N
0.694
OLONG_015531
Oryza longistaminata
OLONG_015531
N
0.694
OMERI08G04670
Oryza meridionalis
OMERI08G04670
N
0.694
ONIVA08G04510
Oryza nivara
ONIVA08G04510
N
0.694
OPUNC08G04510
Oryza punctata
OPUNC08G04510
N
0.694
ORUFI08G05170
Oryza rufipogon
ORUFI08G05170
N
0.694
OS08G0177300
Oryza sativa
OS08G0177300
N
0.694
fgenesh1_pg.scaffold_87000060
Physcomitrella patens
fgenesh1_pg.scaffold_87000060
N
0.674
BRADI2G41720
Brachypodium distachyon
BRADI2G41720
N
0.661
F775_03250
Aegilops tauschii
F775_03250
N
0.661
LPERR11G18970
Leersia perrieri
LPERR11G18970
N
0.661
TRIUR3_27363
Triticum urartu
TRIUR3_27363
N
0.661