CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.006G172000 *(Gossypium raimondii)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Gorai.006G172000	T287597_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK21687.1 M01282_2.00	Cannabis sativa	HWAAACCYH	DRGGTTTWD	PBM Lambert et al.(2019) pTH11299	0.891	0.957
TRP1 M07148_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCCTAA	TTAGGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP1_col	0.891	0.957
TRP2 M07092_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCC	GGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP2_col_a	0.883	0.936
TRP2 M07093_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCCT	AGGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP2_colamp_a	0.883	0.936
TRP5 M01266_2.00	Arabidopsis thaliana	NHWAAACCYH	DRGGTTTWDN	PBM Lambert et al.(2019) pTH9963	0.831	0.936
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.006G172000.1	Myb	535	585	RRPFSVSEVEALVQAVEKLGTGRWRDVKLYAFDNAKHRTYVDLKDKWKTLV
Gorai.006G172000.2	Myb	535	585	RRPFSVSEVEALVQAVEKLGTGRWRDVKLYAFDNAKHRTYVDLKDKWKTLV
Gorai.006G172000.3	Myb	535	565	RRPFSVSEVEALVQAVEKLGTGRWRDVKLYA
Gorai.006G172000.4	Myb	529	579	RRPFSVSEVEALVQAVEKLGTGRWRDVKLYAFDNAKHRTYVDLKDKWKTLV
Gorai.006G172000.5	Myb	341	391	RRPFSVSEVEALVQAVEKLGTGRWRDVKLYAFDNAKHRTYVDLKDKWKTLV

Links
Other Myb/SANT family TFs
Other *Gossypium raimondii* TFs