CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.007G312400
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.007G312400
T287649_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.750
0.839
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.750
0.839
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.714
0.796
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW
WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.713
0.806
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.713
0.806
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.713
0.806
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.700
0.806
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.700
0.806
GAM1_ORYSI
M11055_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.683
0.796
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.007G312400.1
Myb
43
90
KGPWTAIEDAVLVEYVRSHGEGSWNAVQKNTGLARCGKSCRLRWVNHL
Gorai.007G312400.1
Myb
96
141
KGSFSPEEEKIIIELHAKMGNKWARMATQLPGRTDNEIKNYWNTRV
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
196 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.007G312700
Gossypium raimondii
Gorai.007G312700
I
0.795
TCM_030853
Theobroma cacao
TCM_030853
I
0.789
Gorai.002G089900
Gossypium raimondii
Gorai.002G089900
I
0.789
cassava11031.m1
Manihot esculenta
cassava11031.m1
I
0.781
Cagra.0352s0034
Capsella grandiflora
Cagra.0352s0034
I
0.767
Carubv10025227m.g
Capsella rubella
Carubv10025227m.g
I
0.767
Ciclev10014958m.g
Citrus clementina
Ciclev10014958m.g
I
0.767
orange1.1g039708m.g
Citrus sinensis
orange1.1g039708m.g
I
0.767
Thhalv10016567m.g
Eutrema salsugineum
Thhalv10016567m.g
I
0.767
TCM_011907
Theobroma cacao
TCM_011907
I
0.758
29823.m000215
Ricinus communis
29823.m000215
I
0.757
MDP0000308617
Malus domestica
MDP0000308617
I
0.756
MYB101
Arabidopsis thaliana
AT2G32460
D
0.750
Bo3g026690
Brassica oleracea
Bo3g026690
I
0.750
Bra021791
Brassica rapa
Bra021791
I
0.750
MYB101
Arabidopsis lyrata
fgenesh2_kg.4__1233__AT2G32460.2
I
0.750
Bostr.23794s0867
Boechera stricta
Bostr.23794s0867
I
0.750
MDP0000175835
Malus domestica
MDP0000175835
I
0.749
Lus10040063.g
Linum usitatissimum
Lus10040063.g
I
0.745
Gorai.013G159200
Gossypium raimondii
Gorai.013G159200
I
0.742
Aquca_005_00025
Aquilegia coerulea
Aquca_005_00025
I
0.741
SapurV1A.1897s0070
Salix purpurea
SapurV1A.1897s0070
I
0.741
SapurV1A.2567s0040
Salix purpurea
SapurV1A.2567s0040
I
0.741
Bo4g178040
Brassica oleracea
Bo4g178040
I
0.740
PGSC0003DMG400028949
Solanum tuberosum
PGSC0003DMG400028949
I
0.739
Solyc07g052300.2
Solanum lycopersicum
Solyc07g052300.2
I
0.739
gene23946-v1.0-hybrid
Fragaria vesca
gene23946-v1.0-hybrid
I
0.738
MYB101
Vitis vinifera
VIT_12s0059g00700
I
0.736
Lus10021539.g
Linum usitatissimum
Lus10021539.g
I
0.736
Bra022888
Brassica rapa
Bra022888
I
0.735
Cucsa.148580
Cucumis sativus
Cucsa.148580
I
0.734
MYB101
Populus trichocarpa
POPTR_0002s21300
I
0.731
PRUPE_ppa017451mg
Prunus persica
PRUPE_ppa017451mg
I
0.731
Pm015094
Prunus mume
Pm015094
I
0.731
MDP0000179306
Malus domestica
MDP0000179306
I
0.728
MTR_2g088170
Medicago truncatula
MTR_2g088170
I
0.726
MDP0000151688
Malus domestica
MDP0000151688
I
0.726
MDP0000176798
Malus domestica
MDP0000176798
I
0.726
VIT_19s0090g00590
Vitis vinifera
VIT_19s0090g00590
I
0.723
Lus10027189.g
Linum usitatissimum
Lus10027189.g
I
0.723
Lus10035275.g
Linum usitatissimum
Lus10035275.g
I
0.723
Cla005406
Citrullus lanatus
Cla005406
I
0.722
AMTR_s00037p00177500
Amborella trichopoda
AMTR_s00037p00177500
I
0.717
Cla007782
Citrullus lanatus
Cla007782
I
0.717
Q9FR42_TOBAC
Nicotiana tabacum
Q9FR42_TOBAC
D
0.714
myb.Ph3
Petunia x hybrida
Q02994_PETHY
D
0.713
gene03321-v1.0-hybrid
Fragaria vesca
gene03321-v1.0-hybrid
I
0.713
gene03323-v1.0-hybrid
Fragaria vesca
gene03323-v1.0-hybrid
I
0.713
SapurV1A.0014s1240
Salix purpurea
SapurV1A.0014s1240
I
0.713
Ca_07119
Cicer arietinum
Ca_07119
I
0.707
evm.TU.supercontig_12.292
Carica papaya
evm.TU.supercontig_12.292
I
0.706
gw1.238.44.1
Physcomitrella patens
gw1.238.44.1
I
0.705
cassava30977.valid.m1
Manihot esculenta
cassava30977.valid.m1
I
0.704
Cucsa.060080
Cucumis sativus
Cucsa.060080
I
0.704
PRUPE_ppa019943mg
Prunus persica
PRUPE_ppa019943mg
I
0.702
Ciclev10010620m.g
Citrus clementina
Ciclev10010620m.g
I
0.702
orange1.1g046419m.g
Citrus sinensis
orange1.1g046419m.g
I
0.702
AMTR_s00038p00150140
Amborella trichopoda
AMTR_s00038p00150140
I
0.700
BRADI2G53010
Brachypodium distachyon
BRADI2G53010
I
0.700
F775_28392
Aegilops tauschii
F775_28392
I
0.700
GLYMA13G38521
Glycine max
GLYMA13G38521
I
0.700
GRMZM2G139688
Zea mays
GRMZM2G139688
I
0.700
Gam1
Hordeum vulgare
Q96464_HORVU
D
0.700
Si000907m.g
Setaria italica
Si000907m.g
I
0.700
TRAES3BF027700010CFD_g
Triticum aestivum
TRAES3BF027700010CFD_g
I
0.700
TRIUR3_27104
Triticum urartu
TRIUR3_27104
I
0.700
Pavir.Ea03206
Panicum virgatum
Pavir.Ea03206
I
0.700
mgf002965m
Mimulus guttatus
mgf002965m
I
0.698
cassava40302.m1
Manihot esculenta
cassava40302.m1
I
0.697
Bo4g046000
Brassica oleracea
Bo4g046000
I
0.696
Bra005597
Brassica rapa
Bra005597
I
0.696
PRUPE_ppa022465mg
Prunus persica
PRUPE_ppa022465mg
I
0.695
SELMODRAFT_128781
Selaginella moellendorffii
SELMODRAFT_128781
I
0.695
SELMODRAFT_81112
Selaginella moellendorffii
SELMODRAFT_81112
I
0.695
TCM_041010
Theobroma cacao
TCM_041010
I
0.695
Bra035547
Brassica rapa
Bra035547
I
0.694
GLYMA18G10921
Glycine max
GLYMA18G10921
I
0.694
LjT02G13.10.nc
Lotus japonicus
LjT02G13.10.nc
I
0.694
PGSC0003DMG400005918
Solanum tuberosum
PGSC0003DMG400005918
I
0.692
Solyc06g073640.2
Solanum lycopersicum
Solyc06g073640.2
I
0.692
Ca_25013
Cicer arietinum
Ca_25013
I
0.691
SELMODRAFT_117411
Selaginella moellendorffii
SELMODRAFT_117411
I
0.690
SELMODRAFT_84369
Selaginella moellendorffii
SELMODRAFT_84369
I
0.690
Eucgr.A01122
Eucalyptus grandis
Eucgr.A01122
I
0.690
Pavir.Eb03517
Panicum virgatum
Pavir.Eb03517
I
0.690
ATMYB120
Arabidopsis thaliana
AT5G55020
I
0.688
Bra002938
Brassica rapa
Bra002938
I
0.688
GSMUA_Achr1G17150_001
Musa acuminata
GSMUA_Achr1G17150_001
I
0.688
Bostr.26833s0761
Boechera stricta
Bostr.26833s0761
I
0.688
Cagra.1629s0073
Capsella grandiflora
Cagra.1629s0073
I
0.688
Carubv10026070m.g
Capsella rubella
Carubv10026070m.g
I
0.688
Thhalv10013018m.g
Eutrema salsugineum
Thhalv10013018m.g
I
0.688
evm.TU.supercontig_34.210
Carica papaya
evm.TU.supercontig_34.210
I
0.686
GAM1
Oryza indica
BGIOSGA004670
I
0.683
Bo9g119060
Brassica oleracea
Bo9g119060
I
0.683
GAM1_ORYSI
Oryza sativa
GAM1_ORYSI
D
0.683
OB01G43550
Oryza brachyantha
OB01G43550
I
0.683
OBART01G34660
Oryza barthii
OBART01G34660
I
0.683
OGLUM01G20920
Oryza glumaepatula
OGLUM01G20920
I
0.683
OLONG_020610
Oryza longistaminata
OLONG_020610
I
0.683
OMERI01G31990
Oryza meridionalis
OMERI01G31990
I
0.683
GAMYB
Oryza sativa
OS01G0812000
I
0.683
PRUPE_ppa003628mg
Prunus persica
PRUPE_ppa003628mg
I
0.683
Pm016605
Prunus mume
Pm016605
I
0.683
gene00431-v1.0-hybrid
Fragaria vesca
gene00431-v1.0-hybrid
I
0.683
Lus10008685.g
Linum usitatissimum
Lus10008685.g
I
0.683
Lus10026142.g
Linum usitatissimum
Lus10026142.g
I
0.683
GLYMA12G31950
Glycine max
GLYMA12G31950
I
0.682
Gorai.006G121900
Gossypium raimondii
Gorai.006G121900
I
0.682
Lus10026787.g
Linum usitatissimum
Lus10026787.g
I
0.682
Lus10036103.g
Linum usitatissimum
Lus10036103.g
I
0.682
gw1.66.160.1
Physcomitrella patens
gw1.66.160.1
I
0.680
PK17293.1
Cannabis sativa
PK17293.1
I
0.680
GLYMA06G47000
Glycine max
GLYMA06G47000
I
0.679
VIT_07s0005g01210
Vitis vinifera
VIT_07s0005g01210
I
0.679
PGSC0003DMG400013897
Solanum tuberosum
PGSC0003DMG400013897
I
0.677
PGSC0003DMG400022689
Solanum tuberosum
PGSC0003DMG400022689
I
0.676
Solyc01g009070.2
Solanum lycopersicum
Solyc01g009070.2
I
0.676
AtMYB79
Arabidopsis thaliana
AT4G13480
I
0.675
Bo7g033260
Brassica oleracea
Bo7g033260
I
0.675
Bra015029
Brassica rapa
Bra015029
I
0.675
fgenesh2_kg.9__1__AT4G13480.1
Arabidopsis lyrata
fgenesh2_kg.9__1__AT4G13480.1
I
0.675
mgf025568m
Mimulus guttatus
mgf025568m
I
0.675
Sb03g037680
Sorghum bicolor
Sb03g037680
I
0.674
Ca_21739
Cicer arietinum
Ca_21739
I
0.674
Cagra.15509s0001
Capsella grandiflora
Cagra.15509s0001
I
0.674
Carubv10007255m.g
Capsella rubella
Carubv10007255m.g
I
0.674
MDP0000147309
Malus domestica
MDP0000147309
I
0.674
BGIOSGA011479
Oryza indica
BGIOSGA011479
I
0.673
GRMZM2G054111
Zea mays
GRMZM2G054111
I
0.673
MLOC_9927
Hordeum vulgare
MLOC_9927
I
0.673
OB03G13340
Oryza brachyantha
OB03G13340
I
0.673
OBART03G24120
Oryza barthii
OBART03G24120
I
0.673
OGLUM03G24880
Oryza glumaepatula
OGLUM03G24880
I
0.673
OLONG_025057
Oryza longistaminata
OLONG_025057
I
0.673
OMERI03G21920
Oryza meridionalis
OMERI03G21920
I
0.673
ONIVA04G15310
Oryza nivara
ONIVA04G15310
I
0.673
OPUNC03G22220
Oryza punctata
OPUNC03G22220
I
0.673
ORGLA03G0030900
Oryza glaberrima
ORGLA03G0030900
I
0.673
ORGLA03G0224700
Oryza glaberrima
ORGLA03G0224700
I
0.673
ORUFI03G03040
Oryza rufipogon
ORUFI03G03040
I
0.673
ORUFI03G24730
Oryza rufipogon
ORUFI03G24730
I
0.673
OS03G0142600
Oryza sativa
OS03G0142600
I
0.673
OS03G0578900
Oryza sativa
OS03G0578900
I
0.673
Sb01g047450
Sorghum bicolor
Sb01g047450
I
0.673
Si037281m.g
Setaria italica
Si037281m.g
I
0.673
VIT_06s0009g02480
Vitis vinifera
VIT_06s0009g02480
I
0.673
cassava44767.m1
Manihot esculenta
cassava44767.m1
I
0.673
Pavir.Ia04415
Panicum virgatum
Pavir.Ia04415
I
0.673
Si003965m.g
Setaria italica
Si003965m.g
I
0.672
mgf020500m
Mimulus guttatus
mgf020500m
I
0.672
Ciclev10000756m.g
Citrus clementina
Ciclev10000756m.g
I
0.672
orange1.1g011938m.g
Citrus sinensis
orange1.1g011938m.g
I
0.672
Thhalv10001498m.g
Eutrema salsugineum
Thhalv10001498m.g
I
0.672
MYB305
Arabidopsis thaliana
AT3G24310
I
0.671
Bo1g098860
Brassica oleracea
Bo1g098860
I
0.671
Bo3g083130
Brassica oleracea
Bo3g083130
I
0.671
Bra001941
Brassica rapa
Bra001941
I
0.671
Bra028369
Brassica rapa
Bra028369
I
0.671
fgenesh2_kg.3__2645__AT3G24310.1
Arabidopsis lyrata
fgenesh2_kg.3__2645__AT3G24310.1
I
0.671
mgf004640m
Mimulus guttatus
mgf004640m
I
0.671
Bostr.19424s0195
Boechera stricta
Bostr.19424s0195
I
0.671
Bostr.2021s0106
Boechera stricta
Bostr.2021s0106
I
0.671
Carubv10014367m.g
Capsella rubella
Carubv10014367m.g
I
0.671
Thhalv10002634m.g
Eutrema salsugineum
Thhalv10002634m.g
I
0.671
VIT_13s0067g01630
Vitis vinifera
VIT_13s0067g01630
I
0.669
29785.m000932
Ricinus communis
29785.m000932
I
0.669
Aquca_014_00928
Aquilegia coerulea
Aquca_014_00928
I
0.669
gene02324-v1.0-hybrid
Fragaria vesca
gene02324-v1.0-hybrid
I
0.669
Pavir.Ib00221
Panicum virgatum
Pavir.Ib00221
I
0.669
SapurV1A.0008s0050
Salix purpurea
SapurV1A.0008s0050
I
0.669
GSMUA_AchrUn_randomG15100_001
Musa acuminata
GSMUA_AchrUn_randomG15100_001
I
0.667
MTR_3g052450
Medicago truncatula
MTR_3g052450
I
0.667
POPTR_0001s07330
Populus trichocarpa
POPTR_0001s07330
I
0.666
POPTR_0003s18900
Populus trichocarpa
POPTR_0003s18900
I
0.666
TCM_044611
Theobroma cacao
TCM_044611
I
0.666
29686.m000890
Ricinus communis
29686.m000890
I
0.666
cassava1461.valid.m1
Manihot esculenta
cassava1461.valid.m1
I
0.666
Eucgr.G03183
Eucalyptus grandis
Eucgr.G03183
I
0.666
evm.TU.supercontig_33.151
Carica papaya
evm.TU.supercontig_33.151
I
0.666
Gorai.010G212500
Gossypium raimondii
Gorai.010G212500
I
0.666
Gorai.012G022000
Gossypium raimondii
Gorai.012G022000
I
0.666
SapurV1A.0537s0200
Salix purpurea
SapurV1A.0537s0200
I
0.666
Pm011812
Prunus mume
Pm011812
I
0.663
AC217264.3_FG005
Zea mays
AC217264.3_FG005
I
0.662
Bo7g088650
Brassica oleracea
Bo7g088650
I
0.662
ATMYB11
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5002710
I
0.662
GLYMA13G25716
Glycine max
GLYMA13G25716
I
0.662
GLYMA15G35860
Glycine max
GLYMA15G35860
I
0.662
GRMZM2G070523
Zea mays
GRMZM2G070523
I
0.662
MTR_8g042410
Medicago truncatula
MTR_8g042410
I
0.662
Sb01g015920
Sorghum bicolor
Sb01g015920
I
0.662
Thhalv10006080m.g
Eutrema salsugineum
Thhalv10006080m.g
I
0.662
LjSGA_010688.1
Lotus japonicus
LjSGA_010688.1
I
0.662
Aquca_028_00141
Aquilegia coerulea
Aquca_028_00141
I
0.661
Gorai.009G301100
Gossypium raimondii
Gorai.009G301100
I
0.661