CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10010055.g
(
Linum usitatissimum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Lus10010055.g
T287931_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.714
0.871
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.714
0.871
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY
RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.714
0.860
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.700
0.849
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.690
0.839
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.690
0.839
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.690
0.839
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10010055
Myb
11
57
KGPWSPEEDEALQRLVQTYGPRDWTLISKSIPGRSGKSCRLRWCNQL
Lus10010055
Myb
63
108
HRPFTPEEDDIIIKAHARFGNKWATIARLLNGRTDNSIKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Linum usitatissimum
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10010238.g
Linum usitatissimum
Lus10010238.g
I
0.861
Gorai.010G023500
Gossypium raimondii
Gorai.010G023500
I
0.817
POPTR_0002s12410
Populus trichocarpa
POPTR_0002s12410
I
0.793
POPTR_0014s02260
Populus trichocarpa
POPTR_0014s02260
I
0.793
SapurV1A.0919s0160
Salix purpurea
SapurV1A.0919s0160
I
0.793
SapurV1A.1934s0020
Salix purpurea
SapurV1A.1934s0020
I
0.793
SapurV1A.0167s0310
Salix purpurea
SapurV1A.0167s0310
I
0.784
PRUPE_ppa008979mg
Prunus persica
PRUPE_ppa008979mg
I
0.780
Pm005332
Prunus mume
Pm005332
I
0.780
MDP0000463846
Malus domestica
MDP0000463846
I
0.780
MDP0000275800
Malus domestica
MDP0000275800
I
0.776
gene00185-v1.0-hybrid
Fragaria vesca
gene00185-v1.0-hybrid
I
0.775
Gorai.009G215900
Gossypium raimondii
Gorai.009G215900
I
0.772
30170.m013698
Ricinus communis
30170.m013698
I
0.768
cassava47374.m1
Manihot esculenta
cassava47374.m1
I
0.768
PK17282.1
Cannabis sativa
PK17282.1
I
0.765
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.763
POPTR_0005s18620
Populus trichocarpa
POPTR_0005s18620
I
0.762
cassava2215.valid.m1
Manihot esculenta
cassava2215.valid.m1
I
0.762
SapurV1A.0339s0020
Salix purpurea
SapurV1A.0339s0020
I
0.760
GLYMA04G04490
Glycine max
GLYMA04G04490
I
0.758
Eucgr.F00002
Eucalyptus grandis
Eucgr.F00002
I
0.758
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.756
PRUPE_ppa008450mg
Prunus persica
PRUPE_ppa008450mg
I
0.756
cassava43120.valid.m1
Manihot esculenta
cassava43120.valid.m1
I
0.756
Ciclev10026107m.g
Citrus clementina
Ciclev10026107m.g
I
0.756
orange1.1g021071m.g
Citrus sinensis
orange1.1g021071m.g
I
0.756
evm.TU.supercontig_21.145
Carica papaya
evm.TU.supercontig_21.145
I
0.754
Cla020946
Citrullus lanatus
Cla020946
I
0.753
GLYMA17G35620
Glycine max
GLYMA17G35620
I
0.750
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.750
Gorai.009G276400
Gossypium raimondii
Gorai.009G276400
I
0.750
Ciclev10001979m.g
Citrus clementina
Ciclev10001979m.g
I
0.748
orange1.1g022144m.g
Citrus sinensis
orange1.1g022144m.g
I
0.748
SapurV1A.0597s0060
Salix purpurea
SapurV1A.0597s0060
I
0.748
chr5.CM0096.100.nc
Lotus japonicus
chr5.CM0096.100.nc
I
0.748
29970.m000987
Ricinus communis
29970.m000987
I
0.747
MTR_5g016510
Medicago truncatula
MTR_5g016510
I
0.745
CM0528.210.nd
Lotus japonicus
CM0528.210.nd
I
0.745
Ca_02182
Cicer arietinum
Ca_02182
I
0.742
GSMUA_Achr4G20150_001
Musa acuminata
GSMUA_Achr4G20150_001
I
0.741
VIT_18s0001g09850
Vitis vinifera
VIT_18s0001g09850
I
0.736
Cucsa.352560
Cucumis sativus
Cucsa.352560
I
0.736
GSMUA_Achr9G22600_001
Musa acuminata
GSMUA_Achr9G22600_001
I
0.734
GLYMA05G21220
Glycine max
GLYMA05G21220
I
0.732
GSMUA_Achr3G13070_001
Musa acuminata
GSMUA_Achr3G13070_001
I
0.732
PGSC0003DMG400024983
Solanum tuberosum
PGSC0003DMG400024983
I
0.731
Solyc02g092930.1
Solanum lycopersicum
Solyc02g092930.1
I
0.731
Gorai.007G218100
Gossypium raimondii
Gorai.007G218100
I
0.731
MDP0000196986
Malus domestica
MDP0000196986
I
0.731
MDP0000232454
Malus domestica
MDP0000232454
I
0.731
GSMUA_Achr1G26140_001
Musa acuminata
GSMUA_Achr1G26140_001
I
0.730
mgf023922m
Mimulus guttatus
mgf023922m
I
0.730
GLYMA01G39740
Glycine max
GLYMA01G39740
I
0.728
GLYMA11G05550
Glycine max
GLYMA11G05550
I
0.728
chr2.CM0250.240.nd
Lotus japonicus
chr2.CM0250.240.nd
I
0.728
gene24027-v1.0-hybrid
Fragaria vesca
gene24027-v1.0-hybrid
I
0.727
Aquca_007_00776
Aquilegia coerulea
Aquca_007_00776
I
0.726
TCM_000696
Theobroma cacao
TCM_000696
I
0.722
Gorai.007G055600
Gossypium raimondii
Gorai.007G055600
I
0.722
29801.m003096
Ricinus communis
29801.m003096
I
0.718
Thhalv10025742m.g
Eutrema salsugineum
Thhalv10025742m.g
I
0.717
POPTR_0007s10490
Populus trichocarpa
POPTR_0007s10490
I
0.716
VIT_07s0129g01050
Vitis vinifera
VIT_07s0129g01050
I
0.716
TCM_007138
Theobroma cacao
TCM_007138
I
0.715
AtMYB70
Arabidopsis thaliana
AT2G23290
D
0.714
AtMYB70
Arabidopsis lyrata
fgenesh2_kg.4__260__AT2G23290.1
I
0.714
cassava8939.m1
Manihot esculenta
cassava8939.m1
I
0.714
Carubv10023692m.g
Capsella rubella
Carubv10023692m.g
I
0.714
evm.TU.supercontig_6.98
Carica papaya
evm.TU.supercontig_6.98
I
0.714
PK28565.1
Cannabis sativa
PK28565.1
D
0.714
BGIOSGA030245
Oryza indica
BGIOSGA030245
I
0.713
GSMUA_Achr3G28230_001
Musa acuminata
GSMUA_Achr3G28230_001
I
0.713
OB09G10200
Oryza brachyantha
OB09G10200
I
0.713
OBART09G00310
Oryza barthii
OBART09G00310
I
0.713
OGLUM09G00340
Oryza glumaepatula
OGLUM09G00340
I
0.713
OMERI08G05160
Oryza meridionalis
OMERI08G05160
I
0.713
ONIVA09G00250
Oryza nivara
ONIVA09G00250
I
0.713
OPUNC12G06260
Oryza punctata
OPUNC12G06260
I
0.713
ORGLA09G0002900
Oryza glaberrima
ORGLA09G0002900
I
0.713
ORUFI09G00360
Oryza rufipogon
ORUFI09G00360
I
0.713
OS09G0106700
Oryza sativa
OS09G0106700
I
0.713
GSMUA_Achr1G09750_001
Musa acuminata
GSMUA_Achr1G09750_001
I
0.712
GSMUA_Achr8G25220_001
Musa acuminata
GSMUA_Achr8G25220_001
I
0.712
GLYMA14G09540
Glycine max
GLYMA14G09540
I
0.711
Thhalv10000438m.g
Eutrema salsugineum
Thhalv10000438m.g
I
0.711
Sb02g013010
Sorghum bicolor
Sb02g013010
I
0.709
Si032789m.g
Setaria italica
Si032789m.g
I
0.709
Pavir.Ba03084
Panicum virgatum
Pavir.Ba03084
I
0.709
Gorai.005G234900
Gossypium raimondii
Gorai.005G234900
I
0.707
BRADI4G08220
Brachypodium distachyon
BRADI4G08220
I
0.706
Cla022947
Citrullus lanatus
Cla022947
I
0.705
Cucsa.395890
Cucumis sativus
Cucsa.395890
I
0.705
Bostr.27895s0157
Boechera stricta
Bostr.27895s0157
I
0.705
GRMZM2G087955
Zea mays
GRMZM2G087955
I
0.704
LPERR09G00910
Leersia perrieri
LPERR09G00910
I
0.704
MLOC_64817
Hordeum vulgare
MLOC_64817
I
0.704
Traes_5BL_486D0D865
Triticum aestivum
Traes_5BL_486D0D865
I
0.704
Traes_5DL_92CBBE968
Triticum aestivum
Traes_5DL_92CBBE968
I
0.704
Bo3g153550
Brassica oleracea
Bo3g153550
I
0.703
MYB73
Arabidopsis thaliana
AT4G37260
D
0.700
Bo1g004900
Brassica oleracea
Bo1g004900
I
0.700
Bra011749
Brassica rapa
Bra011749
I
0.700
Bostr.7867s1585
Boechera stricta
Bostr.7867s1585
I
0.700
Cagra.1232s0025
Capsella grandiflora
Cagra.1232s0025
I
0.700
Carubv10007638m.g
Capsella rubella
Carubv10007638m.g
I
0.700
Lus10030336.g
Linum usitatissimum
Lus10030336.g
I
0.700
Ciclev10029124m.g
Citrus clementina
Ciclev10029124m.g
I
0.699
orange1.1g040502m.g
Citrus sinensis
orange1.1g040502m.g
I
0.699
Bra010593
Brassica rapa
Bra010593
I
0.696
SapurV1A.0708s0130
Salix purpurea
SapurV1A.0708s0130
I
0.696
Cla014191
Citrullus lanatus
Cla014191
I
0.694
Cucsa.102710
Cucumis sativus
Cucsa.102710
I
0.694
GRMZM2G050550
Zea mays
GRMZM2G050550
I
0.692
GRMZM2G369799
Zea mays
GRMZM2G369799
I
0.692
PGSC0003DMG400003316
Solanum tuberosum
PGSC0003DMG400003316
I
0.692
Solyc04g078420.1
Solanum lycopersicum
Solyc04g078420.1
I
0.692
Pavir.Ca02945
Panicum virgatum
Pavir.Ca02945
I
0.692
Pavir.Cb00156
Panicum virgatum
Pavir.Cb00156
I
0.692
Lus10010260.g
Linum usitatissimum
Lus10010260.g
I
0.691
MYB44
Arabidopsis thaliana
AT5G67300
D
0.690
Bo4g151410
Brassica oleracea
Bo4g151410
I
0.690
Bo7g063830
Brassica oleracea
Bo7g063830
I
0.690
Bra012149
Brassica rapa
Bra012149
I
0.690
Bra032176
Brassica rapa
Bra032176
I
0.690
MTR_4g094982
Medicago truncatula
MTR_4g094982
I
0.690
ATMYBR1
Arabidopsis lyrata
scaffold_803378.1
I
0.690
Bostr.0568s0154
Boechera stricta
Bostr.0568s0154
I
0.690
Cagra.0342s0017
Capsella grandiflora
Cagra.0342s0017
I
0.690
Carubv10027659m.g
Capsella rubella
Carubv10027659m.g
I
0.690
Thhalv10004676m.g
Eutrema salsugineum
Thhalv10004676m.g
I
0.690
Cla006872
Citrullus lanatus
Cla006872
I
0.686
Cucsa.073130
Cucumis sativus
Cucsa.073130
I
0.686
GSMUA_Achr4G12950_001
Musa acuminata
GSMUA_Achr4G12950_001
I
0.685
chr2.CM0002.110.nc
Lotus japonicus
chr2.CM0002.110.nc
I
0.685
Si022959m.g
Setaria italica
Si022959m.g
I
0.684
Gorai.002G009300
Gossypium raimondii
Gorai.002G009300
I
0.684
Bo2g167960
Brassica oleracea
Bo2g167960
I
0.681
e_gw1.9.342.1
Physcomitrella patens
e_gw1.9.342.1
I
0.681
Aquca_045_00169
Aquilegia coerulea
Aquca_045_00169
I
0.681
Ca_12468
Cicer arietinum
Ca_12468
I
0.676
VIT_03s0180g00210
Vitis vinifera
VIT_03s0180g00210
I
0.674
Lus10007503.g
Linum usitatissimum
Lus10007503.g
I
0.673
Lus10028979.g
Linum usitatissimum
Lus10028979.g
I
0.673
Ciclev10032317m.g
Citrus clementina
Ciclev10032317m.g
I
0.672
Lus10014103.g
Linum usitatissimum
Lus10014103.g
I
0.672
orange1.1g046570m.g
Citrus sinensis
orange1.1g046570m.g
I
0.672
PRUPE_ppa023154mg
Prunus persica
PRUPE_ppa023154mg
I
0.670
Pm021211
Prunus mume
Pm021211
I
0.670
mgf014089m
Mimulus guttatus
mgf014089m
I
0.669
mgf002573m
Mimulus guttatus
mgf002573m
I
0.668
Bo7g118450
Brassica oleracea
Bo7g118450
I
0.666
PRUPE_ppa017892mg
Prunus persica
PRUPE_ppa017892mg
I
0.662
Cagra.10445s0001
Capsella grandiflora
Cagra.10445s0001
I
0.662
Carubv10023414m.g
Capsella rubella
Carubv10023414m.g
I
0.662
MDP0000298689
Malus domestica
MDP0000298689
I
0.662
BGIOSGA000003
Oryza indica
BGIOSGA000003
N
0.661
OBART01G45880
Oryza barthii
OBART01G45880
N
0.661
OGLUM01G50230
Oryza glumaepatula
OGLUM01G50230
N
0.661
ONIVA01G52120
Oryza nivara
ONIVA01G52120
N
0.661
OPUNC01G44800
Oryza punctata
OPUNC01G44800
N
0.661
ORGLA01G0396300
Oryza glaberrima
ORGLA01G0396300
N
0.661
ORUFI01G49370
Oryza rufipogon
ORUFI01G49370
N
0.661
OS01G0977300
Oryza sativa
OS01G0977300
N
0.661