CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10010844.g
(
Linum usitatissimum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Lus10010844.g
T287940_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.909
0.979
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
0.901
0.957
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
0.901
0.957
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.891
0.957
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.849
0.957
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10010844
Myb
573
623
RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFDNVHHRTYVDLKDKWKTLV
Links
Other
Myb/SANT
family TFs
Other
Linum usitatissimum
TFs
197 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMAG_19058
Allomyces macrogynus
AMAG_19058
I
AMAG_16339
Allomyces macrogynus
AMAG_16339
I
CAGL0C02277g
Candida glabrata
CAGL0C02277g
I
G210_5718
Candida maltosa
G210_5718
I
CORT_0A04570
Candida orthopsilosis
CORT_0A04570
I
CPAG_02050
Candida parapsilosis
CPAG_02050
I
CANTEDRAFT_137034
Candida tenuis
CANTEDRAFT_137034
I
DEHA2F10384g
Debaryomyces hansenii
DEHA2F10384g
I
LALA0_S01e01838g
Lachancea lanzarotensis
LALA0_S01e01838g
I
LELG_00353
Lodderomyces elongisporus
LELG_00353
I
RO3G_05383
Rhizopus oryzae
RO3G_05383
I
RO3G_00657
Rhizopus oryzae
RO3G_00657
I
SU7_0865
Saccharomyces arboricola
SU7_0865
I
6302_YER040W
Saccharomyces bayanus
6302_YER040W
I
6025_YER040W
Saccharomyces mikatae
6025_YER040W
I
6181_YER040W
Saccharomyces paradoxus
6181_YER040W
I
BN7_575
Wickerhamomyces ciferrii
BN7_575
I
YALI0_F17886g
Yarrowia lipolytica
YALI0_F17886g
I