Lus10012056.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10012056.g T287952_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.841 0.894
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.841 0.894
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.811 0.872
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.803 0.894
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.803 0.894
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.803 0.894
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.803 0.872
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.803 0.872
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.803 0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN

NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.796 0.872
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.762 0.872
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.757 0.872
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.757 0.872
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.736 0.851
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.736 0.851
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.736 0.851
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10012056 Myb 240 291

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

362 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL013544 Aedes aegypti AAEL013544 I
AATE009348 Anopheles atroparvus AATE009348 I
ACEP27848 Atta cephalotes ACEP27848 I
ACOM026725 Anopheles coluzzii ACOM026725 I
ACUA004708 Anopheles culicifacies ACUA004708 I
ACYPI004750 Acyrthosiphon pisum ACYPI004750 I
ADAC007677 Anopheles darlingi ADAC007677 I
AFAF007233 Anopheles farauti AFAF007233 I
AFUN008770 Anopheles funestus AFUN008770 I
AGAP009899 Anopheles gambiae AGAP009899 I
AMAM001551 Anopheles maculatus AMAM001551 I
AMEC014989 Anopheles melas AMEC014989 I
AMEM009101 Anopheles merus AMEM009101 I
AMIN006836 Anopheles minimus AMIN006836 I
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I
ASIS008116 Anopheles sinensis ASIS008116 I
ASU_11043 Ascaris suum ASU_11043 I
Bm9026 Brugia malayi Bm9026 I
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I
CLEC001135 Cimex lectularius CLEC001135 I
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I
klu Drosophila melanogaster FBgn0013469 D
GF23812 Drosophila ananassae FBgn0100806 I
GH16578 Drosophila grimshawi FBgn0124049 I
GI13870 Drosophila mojavensis FBgn0136624 I
GL15747 Drosophila persimilis FBgn0153351 I
GM24789 Drosophila sechellia FBgn0179651 I
GD12837 Drosophila simulans FBgn0184562 I
GJ11729 Drosophila virilis FBgn0198983 I
GK18880 Drosophila willistoni FBgn0220878 I
GE20250 Drosophila yakuba FBgn0237569 I
GA23784 Drosophila pseudoobscura FBgn0245183 I
GB42180 Apis mellifera GB42180 I
GPLIN_001505900 Globodera pallida GPLIN_001505900 I
HCOI02146900 Haemonchus contortus HCOI02146900 I
HHAL008432-PA Halyomorpha halys HHAL008432-PA I
ISCW010362 Ixodes scapularis ISCW010362 I
L596_g19227 Steinernema carpocapsae L596_g19227 I
L798_04121 Zootermopsis nevadensis L798_04121 I
L892_g30369 Steinernema scapterisci L892_g30369 I
L898_g5287 Steinernema monticolum L898_g5287 I
LCUP004097 Lucilia cuprina LCUP004097 I
LDEC006538 Leptinotarsa decemlineata LDEC006538 I
LOAG_17546 Loa loa LOAG_17546 I
MDOA010298 Musca domestica MDOA010298 I
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I
NV17203 Nasonia vitripennis NV17203 I
PHUM540640 Pediculus humanus PHUM540640 I
PPA26808 Pristionchus pacificus PPA26808 I
PPAI001591 Phlebotomus papatasi PPAI001591 I
PTRK_0000952000 Parastrongyloides trichosuri PTRK_0000952000 I
PTRK_0001586500 Parastrongyloides trichosuri PTRK_0001586500 I
RPRC001140 Rhodnius prolixus RPRC001140 I
scaffold108-EXSNAP2012.21 Pristionchus exspectatus scaffold108-EXSNAP2012.21 I
SINV25082 Solenopsis invicta SINV25082 I
SMAR002322 Strigamia maritima SMAR002322 I
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I
TC002783 Tribolium castaneum TC002783 I
WBGene00248644 Onchocerca volvulus WBGene00248644 I
YQE_09824 Dendroctonus ponderosae YQE_09824 I