CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000602739
(
Malus domestica
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
MDP0000602739
T288662_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.822
0.892
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.756
0.817
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.756
0.817
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.727
0.817
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC
GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.672
0.613
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.672
0.613
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.672
0.613
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000602739
Myb
14
61
KGPWTAEEDKKLVNFLLTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL
MDP0000602739
Myb
67
112
RGLLNDAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHI
Links
Other
Myb/SANT
family TFs
Other
Malus domestica
TFs
285 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy