CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g021816m.g
(
Citrus sinensis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
orange1.1g021816m.g
T288835_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN
NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.826
0.872
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN
NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.826
0.872
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.741
0.830
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN
NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.738
0.840
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.736
0.851
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.736
0.851
AT3G11280
M01075_2.00
Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN
PBM
Sullivan et al.(2014)
pTH7245
0.669
0.787
AT3G11280
M07074_2.00
Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH
Dap-seq
OMalley et al.(2016)
At3g11280_col_a
0.669
0.787
AT3G11280
M07075_2.00
Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN
Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a
0.669
0.787
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g021816m
Myb
134
181
GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Citrus sinensis
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28288.m000014
Ricinus communis
28288.m000014
I
0.731
29610.m000410
Ricinus communis
29610.m000410
I
0.685
29681.m001296
Ricinus communis
29681.m001296
I
0.821
Aquca_004_00289
Aquilegia coerulea
Aquca_004_00289
I
0.741
Aquca_009_00736
Aquilegia coerulea
Aquca_009_00736
I
0.739
AT2G38090
Arabidopsis thaliana
AT2G38090
D
0.741
AT3G11280
Arabidopsis thaliana
AT3G11280
D
0.669
AT5G58900
Arabidopsis thaliana
AT5G58900
D
0.736
Bo3g018460
Brassica oleracea
Bo3g018460
I
0.730
Bo3g032160
Brassica oleracea
Bo3g032160
I
0.724
Bo4g029810
Brassica oleracea
Bo4g029810
I
0.741
Bo4g187390
Brassica oleracea
Bo4g187390
I
0.741
Bo9g135730
Brassica oleracea
Bo9g135730
I
0.719
Bostr.23794s0264
Boechera stricta
Bostr.23794s0264
I
0.741
Bostr.26833s0356
Boechera stricta
Bostr.26833s0356
I
0.736
Bra000038
Brassica rapa
Bra000038
I
0.724
Bra002610
Brassica rapa
Bra002610
I
0.759
Bra005139
Brassica rapa
Bra005139
I
0.741
Bra006741
Brassica rapa
Bra006741
I
0.730
Bra017138
Brassica rapa
Bra017138
I
0.741
Bra034173
Brassica rapa
Bra034173
I
0.669
Cagra.0090s0025
Capsella grandiflora
Cagra.0090s0025
I
0.741
Cagra.0891s0087
Capsella grandiflora
Cagra.0891s0087
I
0.736
Carubv10023736m.g
Capsella rubella
Carubv10023736m.g
I
0.741
Carubv10026903m.g
Capsella rubella
Carubv10026903m.g
I
0.736
cassava1257.valid.m1
Manihot esculenta
cassava1257.valid.m1
I
0.684
cassava23290.valid.m1
Manihot esculenta
cassava23290.valid.m1
I
0.758
cassava23356.valid.m1
Manihot esculenta
cassava23356.valid.m1
I
0.803
cassava26873.m1
Manihot esculenta
cassava26873.m1
I
0.697
cassava30173.valid.m1
Manihot esculenta
cassava30173.valid.m1
I
0.731
cassava43688.valid.m1
Manihot esculenta
cassava43688.valid.m1
I
0.740
Ca_12513
Cicer arietinum
Ca_12513
I
0.704
Ca_14247
Cicer arietinum
Ca_14247
I
0.773
Ca_15603
Cicer arietinum
Ca_15603
I
0.803
Ca_19327
Cicer arietinum
Ca_19327
I
0.729
Ciclev10012285m.g
Citrus clementina
Ciclev10012285m.g
I
0.775
Ciclev10028910m.g
Citrus clementina
Ciclev10028910m.g
I
0.909
Ciclev10032309m.g
Citrus clementina
Ciclev10032309m.g
I
0.701
Cla004397
Citrullus lanatus
Cla004397
I
0.739
Cla013553
Citrullus lanatus
Cla013553
I
0.776
Cucsa.139090
Cucumis sativus
Cucsa.139090
I
0.765
Cucsa.164580
Cucumis sativus
Cucsa.164580
I
0.766
Eucgr.B02800
Eucalyptus grandis
Eucgr.B02800
I
0.709
Eucgr.J01940
Eucalyptus grandis
Eucgr.J01940
I
0.737
evm.TU.supercontig_112.58
Carica papaya
evm.TU.supercontig_112.58
I
0.811
evm.TU.supercontig_1130.1
Carica papaya
evm.TU.supercontig_1130.1
I
0.749
fgenesh2_kg.3__1170__AT3G11280.1
Arabidopsis lyrata
fgenesh2_kg.3__1170__AT3G11280.1
I
0.669
fgenesh2_kg.4__1876__AT2G38090.1
Arabidopsis lyrata
fgenesh2_kg.4__1876__AT2G38090.1
I
0.717
fgenesh2_kg.8__1829__AT5G58900.1
Arabidopsis lyrata
fgenesh2_kg.8__1829__AT5G58900.1
I
0.736
gene07984-v1.0-hybrid
Fragaria vesca
gene07984-v1.0-hybrid
I
0.767
gene18815-v1.0-hybrid
Fragaria vesca
gene18815-v1.0-hybrid
I
0.746
GLYMA01G27720
Glycine max
GLYMA01G27720
I
0.753
GLYMA02G39000
Glycine max
GLYMA02G39000
I
0.825
GLYMA02G42140
Glycine max
GLYMA02G42140
I
0.719
GLYMA03G14440
Glycine max
GLYMA03G14440
I
0.753
GLYMA07G17660
Glycine max
GLYMA07G17660
I
0.766
GLYMA11G22960
Glycine max
GLYMA11G22960
I
0.768
GLYMA11G34930
Glycine max
GLYMA11G34930
I
0.706
GLYMA14G06750
Glycine max
GLYMA14G06750
I
0.675
GLYMA14G37050
Glycine max
GLYMA14G37050
I
0.825
GLYMA18G03430
Glycine max
GLYMA18G03430
I
0.706
GLYMA18G07250
Glycine max
GLYMA18G07250
I
0.724
GLYMA18G42530
Glycine max
GLYMA18G42530
I
0.766
Gorai.002G261600
Gossypium raimondii
Gorai.002G261600
I
0.734
Gorai.006G180900
Gossypium raimondii
Gorai.006G180900
I
0.681
Gorai.007G378300
Gossypium raimondii
Gorai.007G378300
I
0.701
Gorai.009G093700
Gossypium raimondii
Gorai.009G093700
I
0.835
Gorai.012G075600
Gossypium raimondii
Gorai.012G075600
I
0.677
Gorai.012G112000
Gossypium raimondii
Gorai.012G112000
I
0.729
GSMUA_Achr10G00660_001
Musa acuminata
GSMUA_Achr10G00660_001
I
0.668
GSMUA_Achr10G02290_001
Musa acuminata
GSMUA_Achr10G02290_001
I
0.674
Lus10009884.g
Linum usitatissimum
Lus10009884.g
I
0.684
Lus10014837.g
Linum usitatissimum
Lus10014837.g
I
0.674
Lus10018209.g
Linum usitatissimum
Lus10018209.g
I
0.746
Lus10028264.g
Linum usitatissimum
Lus10028264.g
I
0.662
Lus10040696.g
Linum usitatissimum
Lus10040696.g
I
0.758
MDP0000142580
Malus domestica
MDP0000142580
I
0.762
MDP0000221993
Malus domestica
MDP0000221993
I
0.745
MDP0000243328
Malus domestica
MDP0000243328
I
0.772
MDP0000255630
Malus domestica
MDP0000255630
I
0.772
MDP0000292581
Malus domestica
MDP0000292581
I
0.772
mgf022442m
Mimulus guttatus
mgf022442m
I
0.749
MTR_3g462790
Medicago truncatula
MTR_3g462790
I
0.806
MTR_5g069710
Medicago truncatula
MTR_5g069710
I
0.772
MTR_5g081860
Medicago truncatula
MTR_5g081860
I
0.694
MTR_7g067080
Medicago truncatula
MTR_7g067080
I
0.729
orange1.1g021756m.g
Citrus sinensis
orange1.1g021756m.g
I
0.775
orange1.1g023196m.g
Citrus sinensis
orange1.1g023196m.g
I
0.701
Pavir.J16113
Panicum virgatum
Pavir.J16113
I
0.672
PGSC0003DMG400019129
Solanum tuberosum
PGSC0003DMG400019129
I
0.729
PGSC0003DMG400020344
Solanum tuberosum
PGSC0003DMG400020344
I
0.700
PGSC0003DMG400030348
Solanum tuberosum
PGSC0003DMG400030348
I
0.757
PK27213.1
Cannabis sativa
PK27213.1
D
0.826
PK27693.1
Cannabis sativa
PK27693.1
D
0.738
Pm000529
Prunus mume
Pm000529
I
0.778
Pm002536
Prunus mume
Pm002536
I
0.753
Pm018878
Prunus mume
Pm018878
I
0.671
POPTR_0001s25590
Populus trichocarpa
POPTR_0001s25590
I
0.769
POPTR_0006s09860
Populus trichocarpa
POPTR_0006s09860
I
0.720
POPTR_0008s06450
Populus trichocarpa
POPTR_0008s06450
I
0.698
POPTR_0009s04730
Populus trichocarpa
POPTR_0009s04730
I
0.776
POPTR_0010s20040
Populus trichocarpa
POPTR_0010s20040
I
0.686
POPTR_0016s11980
Populus trichocarpa
POPTR_0016s11980
I
0.729
PRUPE_ppa009072mg
Prunus persica
PRUPE_ppa009072mg
I
0.769
PRUPE_ppa009103mg
Prunus persica
PRUPE_ppa009103mg
I
0.753
PRUPE_ppa018139mg
Prunus persica
PRUPE_ppa018139mg
I
0.671
SapurV1A.0001s0790
Salix purpurea
SapurV1A.0001s0790
I
0.710
SapurV1A.0041s0720
Salix purpurea
SapurV1A.0041s0720
I
0.760
SapurV1A.0164s0380
Salix purpurea
SapurV1A.0164s0380
I
0.760
SapurV1A.0262s0080
Salix purpurea
SapurV1A.0262s0080
I
0.686
SapurV1A.0709s0190
Salix purpurea
SapurV1A.0709s0190
I
0.662
SapurV1A.0778s0020
Salix purpurea
SapurV1A.0778s0020
I
0.735
SapurV1A.3589s0010
Salix purpurea
SapurV1A.3589s0010
I
0.735
Solyc06g076770.2
Solanum lycopersicum
Solyc06g076770.2
I
0.757
Solyc09g014250.2
Solanum lycopersicum
Solyc09g014250.2
I
0.700
Solyc10g076820.1
Solanum lycopersicum
Solyc10g076820.1
I
0.729
TCM_021750
Theobroma cacao
TCM_021750
I
0.734
TCM_041672
Theobroma cacao
TCM_041672
I
0.826
TCM_042604
Theobroma cacao
TCM_042604
I
0.686
Thhalv10014270m.g
Eutrema salsugineum
Thhalv10014270m.g
I
0.760
Thhalv10014410m.g
Eutrema salsugineum
Thhalv10014410m.g
I
0.666
Thhalv10017008m.g
Eutrema salsugineum
Thhalv10017008m.g
I
0.717
VIT_06s0004g06100
Vitis vinifera
VIT_06s0004g06100
I
0.765
VIT_08s0007g01920
Vitis vinifera
VIT_08s0007g01920
I
0.732