CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g040811m.g
(
Citrus sinensis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
orange1.1g040811m.g
T288905_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.853
0.978
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.853
0.978
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.853
0.978
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.853
0.956
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT
AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.853
0.956
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN
NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.845
0.933
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD
HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.836
0.911
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.836
0.911
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.836
0.911
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT
AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.830
0.911
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN
NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.808
0.889
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.808
0.889
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.808
0.889
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT
AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.683
0.689
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.683
0.689
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW
WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.683
0.689
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g040811m
Myb
1
45
ESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Citrus sinensis
TFs
254 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA013136
Oryza indica
BGIOSGA013136
N
BGIOSGA013139
Oryza indica
BGIOSGA013139
N
LPERR03G21750
Leersia perrieri
LPERR03G21750
N
LPERR03G21760
Leersia perrieri
LPERR03G21760
N
OBART03G26260
Oryza barthii
OBART03G26260
N
OMERI03G23710
Oryza meridionalis
OMERI03G23710
N
ONIVA03G27270
Oryza nivara
ONIVA03G27270
N
OPUNC03G23990
Oryza punctata
OPUNC03G23990
N
OPUNC03G24010
Oryza punctata
OPUNC03G24010
N
ORGLA03G0243900
Oryza glaberrima
ORGLA03G0243900
N
ORGLA03G0244100
Oryza glaberrima
ORGLA03G0244100
N