CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g045400m.g
(
Citrus sinensis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
orange1.1g045400m.g
T288930_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD
HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.673
0.699
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.673
0.699
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.673
0.699
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g045400m
Myb
19
66
KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL
orange1.1g045400m
Myb
72
117
RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHL
Links
Other
Myb/SANT
family TFs
Other
Citrus sinensis
TFs
262 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_08647
Aegilops tauschii
F775_08647
I
0.710
F775_26161
Aegilops tauschii
F775_26161
I
0.729
AMTR_s00032p00221670
Amborella trichopoda
AMTR_s00032p00221670
I
0.666
AMTR_s00036p00107460
Amborella trichopoda
AMTR_s00036p00107460
I
0.765
Aquca_030_00385
Aquilegia coerulea
Aquca_030_00385
I
0.663
Aquca_034_00423
Aquilegia coerulea
Aquca_034_00423
I
0.730
AtMYB45
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5001377
I
0.661
AtMYB18
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_7001401
I
0.681
ATMYB86
Arabidopsis lyrata
fgenesh2_kg.6__2630__AT5G26660.1
I
0.673
MYB55
Arabidopsis lyrata
fgenesh2_kg.6__3543__AT4G01680.1
I
0.673
AtMYB19
Arabidopsis lyrata
fgenesh2_kg.8__1111__AT5G52260.1
I
0.720
MYB55
Arabidopsis thaliana
AT4G01680
D
0.673
LAF1
Arabidopsis thaliana
AT4G25560
I
0.690
MYB86
Arabidopsis thaliana
AT5G26660
I
0.673
AtMYB19
Arabidopsis thaliana
AT5G52260
I
0.720
Bostr.18473s0062
Boechera stricta
Bostr.18473s0062
I
0.685
Bostr.29827s0161
Boechera stricta
Bostr.29827s0161
I
0.673
Bostr.30057s0004
Boechera stricta
Bostr.30057s0004
I
0.661
Bostr.4825s0008
Boechera stricta
Bostr.4825s0008
I
0.673
Bostr.7305s0041
Boechera stricta
Bostr.7305s0041
I
0.720
Bostr.7867s0367
Boechera stricta
Bostr.7867s0367
I
0.690
BRADI3G46910
Brachypodium distachyon
BRADI3G46910
I
0.678
BRADI3G49970
Brachypodium distachyon
BRADI3G49970
I
0.706
BRADI3G52260
Brachypodium distachyon
BRADI3G52260
I
0.677
BRADI5G12417
Brachypodium distachyon
BRADI5G12417
I
0.729
BRADI5G16672
Brachypodium distachyon
BRADI5G16672
I
0.714
Bo2g156300
Brassica oleracea
Bo2g156300
I
0.673
Bo3g023270
Brassica oleracea
Bo3g023270
I
0.720
Bo5g009920
Brassica oleracea
Bo5g009920
I
0.663
Bo7g095130
Brassica oleracea
Bo7g095130
I
0.673
Bo7g110400
Brassica oleracea
Bo7g110400
N
0.666
Bo8g077360
Brassica oleracea
Bo8g077360
I
0.678
Bo9g004210
Brassica oleracea
Bo9g004210
I
0.673
Bo9g010860
Brassica oleracea
Bo9g010860
I
0.673
Bra018027
Brassica rapa
Bra018027
I
0.700
Bra029129
Brassica rapa
Bra029129
I
0.720
Bra036317
Brassica rapa
Bra036317
I
0.673
Bra036588
Brassica rapa
Bra036588
I
0.673
PK03176.1
Cannabis sativa
PK03176.1
I
0.663
PK13930.1
Cannabis sativa
PK13930.1
I
0.661
PK18276.1
Cannabis sativa
PK18276.1
I
0.763
PK26207.1
Cannabis sativa
PK26207.1
I
0.661
Cagra.0094s0035
Capsella grandiflora
Cagra.0094s0035
I
0.682
Cagra.0334s0011
Capsella grandiflora
Cagra.0334s0011
I
0.673
Cagra.2337s0007
Capsella grandiflora
Cagra.2337s0007
I
0.677
Cagra.23492s0001
Capsella grandiflora
Cagra.23492s0001
I
0.673
Cagra.23907s0010
Capsella grandiflora
Cagra.23907s0010
I
0.690
Carubv10001224m.g
Capsella rubella
Carubv10001224m.g
I
0.673
Carubv10001308m.g
Capsella rubella
Carubv10001308m.g
I
0.673
Carubv10007732m.g
Capsella rubella
Carubv10007732m.g
I
0.690
Carubv10018592m.g
Capsella rubella
Carubv10018592m.g
I
0.677
Carubv10027541m.g
Capsella rubella
Carubv10027541m.g
I
0.682
evm.TU.supercontig_107.47
Carica papaya
evm.TU.supercontig_107.47
I
0.778
evm.TU.supercontig_84.59
Carica papaya
evm.TU.supercontig_84.59
I
0.661
Ca_01055
Cicer arietinum
Ca_01055
I
0.682
Ca_01072
Cicer arietinum
Ca_01072
I
0.673
Ca_03589
Cicer arietinum
Ca_03589
I
0.673
Ca_19758
Cicer arietinum
Ca_19758
I
0.743
Cla001724
Citrullus lanatus
Cla001724
I
0.762
Cla005219
Citrullus lanatus
Cla005219
I
0.663
Cla006288
Citrullus lanatus
Cla006288
I
0.670
Cla010483
Citrullus lanatus
Cla010483
I
0.663
Cla017541
Citrullus lanatus
Cla017541
I
0.672
Cla020303
Citrullus lanatus
Cla020303
I
0.663
Ciclev10006897m.g
Citrus clementina
Ciclev10006897m.g
N
0.888
Ciclev10017658m.g
Citrus clementina
Ciclev10017658m.g
I
0.661
Ciclev10033327m.g
Citrus clementina
Ciclev10033327m.g
I
0.671
orange1.1g021164m.g
Citrus sinensis
orange1.1g021164m.g
I
0.661
orange1.1g039016m.g
Citrus sinensis
orange1.1g039016m.g
I
0.671
Cucsa.051050
Cucumis sativus
Cucsa.051050
I
0.663
Cucsa.090310
Cucumis sativus
Cucsa.090310
I
0.663
Cucsa.158170
Cucumis sativus
Cucsa.158170
I
0.663
Cucsa.195180
Cucumis sativus
Cucsa.195180
I
0.672
Cucsa.313950
Cucumis sativus
Cucsa.313950
I
0.751
Eucgr.A00996
Eucalyptus grandis
Eucgr.A00996
I
0.690
Eucgr.A02796
Eucalyptus grandis
Eucgr.A02796
I
0.775
Eucgr.H01337
Eucalyptus grandis
Eucgr.H01337
I
0.673
Eucgr.K00250
Eucalyptus grandis
Eucgr.K00250
I
0.787
Eucgr.K00251
Eucalyptus grandis
Eucgr.K00251
N
0.738
Eucgr.K00555
Eucalyptus grandis
Eucgr.K00555
I
0.703
Thhalv10004450m.g
Eutrema salsugineum
Thhalv10004450m.g
I
0.673
Thhalv10010657m.g
Eutrema salsugineum
Thhalv10010657m.g
I
0.685
Thhalv10014388m.g
Eutrema salsugineum
Thhalv10014388m.g
I
0.711
Thhalv10028778m.g
Eutrema salsugineum
Thhalv10028778m.g
I
0.673
gene13281-v1.0-hybrid
Fragaria vesca
gene13281-v1.0-hybrid
I
0.789
gene22961-v1.0-hybrid
Fragaria vesca
gene22961-v1.0-hybrid
I
0.663
GLYMA01G06192
Glycine max
GLYMA01G06192
I
0.685
GLYMA03G38660
Glycine max
GLYMA03G38660
I
0.673
GLYMA09G25655
Glycine max
GLYMA09G25655
I
0.721
GLYMA09G37040
Glycine max
GLYMA09G37040
I
0.668
GLYMA10G38110
Glycine max
GLYMA10G38110
I
0.722
GLYMA11G14200
Glycine max
GLYMA11G14200
I
0.661
GLYMA12G06180
Glycine max
GLYMA12G06180
I
0.661
GLYMA13G27310
Glycine max
GLYMA13G27310
I
0.666
GLYMA16G31280
Glycine max
GLYMA16G31280
I
0.731
GLYMA18G49630
Glycine max
GLYMA18G49630
I
0.668
GLYMA19G41250
Glycine max
GLYMA19G41250
I
0.673
GLYMA20G22230
Glycine max
GLYMA20G22230
I
0.673
GLYMA20G29710
Glycine max
GLYMA20G29710
I
0.722
Gorai.007G011100
Gossypium raimondii
Gorai.007G011100
I
0.765
Gorai.008G277900
Gossypium raimondii
Gorai.008G277900
I
0.790
Gorai.011G122800
Gossypium raimondii
Gorai.011G122800
I
0.668
Gorai.012G186500
Gossypium raimondii
Gorai.012G186500
I
0.693
Gorai.013G088300
Gossypium raimondii
Gorai.013G088300
I
0.693
MLOC_13019
Hordeum vulgare
MLOC_13019
I
0.710
MLOC_73614
Hordeum vulgare
MLOC_73614
I
0.693
LPERR02G23410
Leersia perrieri
LPERR02G23410
I
0.673
LPERR04G16000
Leersia perrieri
LPERR04G16000
I
0.701
Lus10005739.g
Linum usitatissimum
Lus10005739.g
I
0.810
Lus10005740.g
Linum usitatissimum
Lus10005740.g
I
0.730
Lus10027458.g
Linum usitatissimum
Lus10027458.g
I
0.777
Lus10031281.g
Linum usitatissimum
Lus10031281.g
I
0.661
Lus10039213.g
Linum usitatissimum
Lus10039213.g
I
0.787
chr1.CM0206.990.nd
Lotus japonicus
chr1.CM0206.990.nd
I
0.703
chr5.CM0148.380.nc
Lotus japonicus
chr5.CM0148.380.nc
I
0.755
MDP0000135594
Malus domestica
MDP0000135594
I
0.676
MDP0000152575
Malus domestica
MDP0000152575
I
0.777
MDP0000204495
Malus domestica
MDP0000204495
I
0.661
MDP0000601420
Malus domestica
MDP0000601420
I
0.663
MDP0000653903
Malus domestica
MDP0000653903
I
0.663
MDP0000722954
Malus domestica
MDP0000722954
I
0.661
MDP0000896053
Malus domestica
MDP0000896053
I
0.763
MDP0000932804
Malus domestica
MDP0000932804
I
0.663
cassava12868.valid.m1
Manihot esculenta
cassava12868.valid.m1
I
0.663
cassava17679.valid.m1
Manihot esculenta
cassava17679.valid.m1
I
0.663
cassava21326.m1
Manihot esculenta
cassava21326.m1
I
0.758
cassava26284.m1
Manihot esculenta
cassava26284.m1
I
0.836
cassava30676.valid.m1
Manihot esculenta
cassava30676.valid.m1
I
0.661
cassava3811.m1
Manihot esculenta
cassava3811.m1
I
0.665
cassava5203.m1
Manihot esculenta
cassava5203.m1
I
0.661
MTR_1g085040
Medicago truncatula
MTR_1g085040
I
0.673
MTR_1g100667
Medicago truncatula
MTR_1g100667
I
0.749
MTR_4g065017
Medicago truncatula
MTR_4g065017
I
0.661
MTR_6g055910
Medicago truncatula
MTR_6g055910
I
0.703
MTR_7g111290
Medicago truncatula
MTR_7g111290
I
0.703
mgf005459m
Mimulus guttatus
mgf005459m
I
0.669
mgf018105m
Mimulus guttatus
mgf018105m
I
0.669
mgf024107m
Mimulus guttatus
mgf024107m
I
0.682
mgf024114m
Mimulus guttatus
mgf024114m
I
0.733
GSMUA_Achr4G29410_001
Musa acuminata
GSMUA_Achr4G29410_001
I
0.695
GSMUA_Achr8G11340_001
Musa acuminata
GSMUA_Achr8G11340_001
I
0.708
GSMUA_Achr8G18730_001
Musa acuminata
GSMUA_Achr8G18730_001
I
0.681
OBART02G21860
Oryza barthii
OBART02G21860
I
0.723
OBART02G25570
Oryza barthii
OBART02G25570
I
0.726
OBART02G28790
Oryza barthii
OBART02G28790
I
0.664
OBART04G14990
Oryza barthii
OBART04G14990
I
0.729
OBART04G19730
Oryza barthii
OBART04G19730
I
0.689
OBART04G23680
Oryza barthii
OBART04G23680
I
0.684
OB02G29290
Oryza brachyantha
OB02G29290
I
0.723
OB02G32950
Oryza brachyantha
OB02G32950
I
0.726
OB02G35920
Oryza brachyantha
OB02G35920
I
0.673
OB04G22310
Oryza brachyantha
OB04G22310
I
0.729
OB04G26810
Oryza brachyantha
OB04G26810
I
0.705
OB07G21090
Oryza brachyantha
OB07G21090
I
0.702
ORGLA04G0119800
Oryza glaberrima
ORGLA04G0119800
I
0.729
ORGLA04G0168700
Oryza glaberrima
ORGLA04G0168700
I
0.689
ORGLA04G0202400
Oryza glaberrima
ORGLA04G0202400
I
0.684
ORGLA10G0151700
Oryza glaberrima
ORGLA10G0151700
I
0.689
OGLUM02G22040
Oryza glumaepatula
OGLUM02G22040
I
0.723
OGLUM02G26100
Oryza glumaepatula
OGLUM02G26100
I
0.726
OGLUM02G29380
Oryza glumaepatula
OGLUM02G29380
I
0.664
OGLUM04G19590
Oryza glumaepatula
OGLUM04G19590
I
0.689
OGLUM04G23630
Oryza glumaepatula
OGLUM04G23630
I
0.684
BGIOSGA005798
Oryza indica
BGIOSGA005798
I
0.664
BGIOSGA008493
Oryza indica
BGIOSGA008493
I
0.723
BGIOSGA008698
Oryza indica
BGIOSGA008698
I
0.726
BGIOSGA014440
Oryza indica
BGIOSGA014440
I
0.684
BGIOSGA016547
Oryza indica
BGIOSGA016547
I
0.729
BGIOSGA016820
Oryza indica
BGIOSGA016820
I
0.689
OLONG_022853
Oryza longistaminata
OLONG_022853
I
0.664
OMERI02G21400
Oryza meridionalis
OMERI02G21400
I
0.723
OMERI02G25080
Oryza meridionalis
OMERI02G25080
I
0.726
OMERI02G27850
Oryza meridionalis
OMERI02G27850
I
0.664
OMERI04G16730
Oryza meridionalis
OMERI04G16730
I
0.689
OMERI04G19570
Oryza meridionalis
OMERI04G19570
I
0.684
ONIVA02G24090
Oryza nivara
ONIVA02G24090
I
0.723
ONIVA02G28010
Oryza nivara
ONIVA02G28010
I
0.726
ONIVA02G31530
Oryza nivara
ONIVA02G31530
I
0.664
ONIVA04G13130
Oryza nivara
ONIVA04G13130
I
0.729
ONIVA04G17950
Oryza nivara
ONIVA04G17950
I
0.689
ONIVA04G19740
Oryza nivara
ONIVA04G19740
I
0.684
OPUNC02G23410
Oryza punctata
OPUNC02G23410
I
0.726
OPUNC02G26430
Oryza punctata
OPUNC02G26430
I
0.673
OPUNC04G17450
Oryza punctata
OPUNC04G17450
I
0.689
OPUNC04G21230
Oryza punctata
OPUNC04G21230
I
0.684
ORUFI02G22940
Oryza rufipogon
ORUFI02G22940
I
0.723
ORUFI02G26980
Oryza rufipogon
ORUFI02G26980
I
0.735
ORUFI02G30350
Oryza rufipogon
ORUFI02G30350
I
0.664
ORUFI04G16390
Oryza rufipogon
ORUFI04G16390
I
0.729
ORUFI04G21270
Oryza rufipogon
ORUFI04G21270
I
0.689
ORUFI04G25410
Oryza rufipogon
ORUFI04G25410
I
0.684
OS02G0695200
Oryza sativa
OS02G0695200
I
0.664
OS04G0461000
Oryza sativa
OS04G0461000
I
0.729
OS04G0532800
Oryza sativa
OS04G0532800
I
0.689
OS04G0594100
Oryza sativa
OS04G0594100
I
0.684
Pavir.Ab02021
Panicum virgatum
Pavir.Ab02021
I
0.702
Pavir.Ab02417
Panicum virgatum
Pavir.Ab02417
I
0.696
Pavir.Ga00879
Panicum virgatum
Pavir.Ga00879
I
0.680
Pavir.Gb00734
Panicum virgatum
Pavir.Gb00734
I
0.680
PDK_20s1606731g001
Phoenix dactylifera
PDK_20s1606731g001
I
0.675
e_gw1.211.99.1
Physcomitrella patens
e_gw1.211.99.1
I
0.687
e_gw1.24.66.1
Physcomitrella patens
e_gw1.24.66.1
I
0.679
fgenesh1_pg.scaffold_189000016
Physcomitrella patens
fgenesh1_pg.scaffold_189000016
I
0.679
gw1.149.61.1
Physcomitrella patens
gw1.149.61.1
I
0.689
POPTR_0009s05860
Populus trichocarpa
POPTR_0009s05860
I
0.661
POPTR_0010s17300
Populus trichocarpa
POPTR_0010s17300
I
0.662
POPTR_0012s13260
Populus trichocarpa
POPTR_0012s13260
I
0.829
POPTR_0015s13190
Populus trichocarpa
POPTR_0015s13190
I
0.800
Pm003267
Prunus mume
Pm003267
I
0.663
Pm015547
Prunus mume
Pm015547
I
0.667
Pm019344
Prunus mume
Pm019344
I
0.791
Pm028882
Prunus mume
Pm028882
I
0.662
Pm030488
Prunus mume
Pm030488
I
0.667
PRUPE_ppa009566mg
Prunus persica
PRUPE_ppa009566mg
I
0.661
PRUPE_ppa019718mg
Prunus persica
PRUPE_ppa019718mg
I
0.663
PRUPE_ppa019729mg
Prunus persica
PRUPE_ppa019729mg
I
0.791
SapurV1A.0063s0570
Salix purpurea
SapurV1A.0063s0570
I
0.662
SapurV1A.0534s0230
Salix purpurea
SapurV1A.0534s0230
I
0.661
SapurV1A.0754s0180
Salix purpurea
SapurV1A.0754s0180
I
0.779
SapurV1A.1253s0100
Salix purpurea
SapurV1A.1253s0100
I
0.777
SELMODRAFT_437219
Selaginella moellendorffii
SELMODRAFT_437219
I
0.676
Si010352m.g
Setaria italica
Si010352m.g
I
0.729
Si010384m.g
Setaria italica
Si010384m.g
I
0.684
Si012304m.g
Setaria italica
Si012304m.g
I
0.680
Si017851m.g
Setaria italica
Si017851m.g
I
0.702
Si017947m.g
Setaria italica
Si017947m.g
I
0.705
Solyc03g025870.2
Solanum lycopersicum
Solyc03g025870.2
I
0.741
Solyc10g044680.1
Solanum lycopersicum
Solyc10g044680.1
I
0.671
PGSC0003DMG400014291
Solanum tuberosum
PGSC0003DMG400014291
I
0.774
Sb01g034270
Sorghum bicolor
Sb01g034270
I
0.683
Sb04g024000
Sorghum bicolor
Sb04g024000
I
0.702
Sb04g031110
Sorghum bicolor
Sb04g031110
I
0.673
Sb04g033680
Sorghum bicolor
Sb04g033680
I
0.703
Sb06g023610
Sorghum bicolor
Sb06g023610
I
0.717
TCM_011659
Theobroma cacao
TCM_011659
I
0.663
TCM_015157
Theobroma cacao
TCM_015157
I
0.769
TCM_026853
Theobroma cacao
TCM_026853
I
0.663
Traes_2AL_2D4100475
Triticum aestivum
Traes_2AL_2D4100475
I
0.693
Traes_2AL_962A9D448
Triticum aestivum
Traes_2AL_962A9D448
I
0.714
Traes_2AL_AF9357B4C
Triticum aestivum
Traes_2AL_AF9357B4C
N
0.673
Traes_2BL_03F3475CD
Triticum aestivum
Traes_2BL_03F3475CD
I
0.714
Traes_2BL_34A0848F2
Triticum aestivum
Traes_2BL_34A0848F2
I
0.669
Traes_2BL_35241DE8D
Triticum aestivum
Traes_2BL_35241DE8D
I
0.693
Traes_2BL_604FE7639
Triticum aestivum
Traes_2BL_604FE7639
I
0.714
Traes_2BL_7CEC6A8D7
Triticum aestivum
Traes_2BL_7CEC6A8D7
I
0.693
Traes_2BS_CA02DC5B2
Triticum aestivum
Traes_2BS_CA02DC5B2
I
0.684
Traes_2DL_C964675DE
Triticum aestivum
Traes_2DL_C964675DE
I
0.729
Traes_6AL_D10CBA40D
Triticum aestivum
Traes_6AL_D10CBA40D
I
0.710
Traes_6BL_CE61B9510
Triticum aestivum
Traes_6BL_CE61B9510
I
0.710
Traes_6DL_A014E9069
Triticum aestivum
Traes_6DL_A014E9069
I
0.710
TRIUR3_15020
Triticum urartu
TRIUR3_15020
I
0.693
TRIUR3_25784
Triticum urartu
TRIUR3_25784
I
0.729
TRIUR3_32691
Triticum urartu
TRIUR3_32691
I
0.710
VIT_05s0020g01100
Vitis vinifera
VIT_05s0020g01100
I
0.661
VIT_05s0049g01020
Vitis vinifera
VIT_05s0049g01020
I
0.664
VIT_06s0004g02110
Vitis vinifera
VIT_06s0004g02110
I
0.661
VIT_16s0050g00050
Vitis vinifera
VIT_16s0050g00050
I
0.758
GRMZM2G001223
Zea mays
GRMZM2G001223
I
0.685
GRMZM2G032655
Zea mays
GRMZM2G032655
I
0.729
GRMZM2G038722
Zea mays
GRMZM2G038722
I
0.680
GRMZM2G170049
Zea mays
GRMZM2G170049
I
0.710
GRMZM2G496770
Zea mays
GRMZM2G496770
I
0.709