CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Fb01900
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Fb01900
T289201_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fb01900.1.p
Myb
15
62
KGPWTAEEDEVLLRHVREHGPRDWSSIRSKGLLPRTGKSCRLRWVNKL
Pavir.Fb01900.1.p
Myb
69
113
GCKFSSEEERVVIDLQAQIGNKWARIATYLPGRTDNDVKNFWSTR
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
89 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si012032m.g
Setaria italica
Si012032m.g
N
0.850
Pavir.Gb01130
Panicum virgatum
Pavir.Gb01130
N
0.850
MDP0000237596
Malus domestica
MDP0000237596
N
0.843
MDP0000319634
Malus domestica
MDP0000319634
N
0.843
Pavir.J30013
Panicum virgatum
Pavir.J30013
N
0.842
Pavir.J35399
Panicum virgatum
Pavir.J35399
N
0.842
Si015815m.g
Setaria italica
Si015815m.g
N
0.841
Pavir.Fa00479
Panicum virgatum
Pavir.Fa00479
N
0.841
TCM_005653
Theobroma cacao
TCM_005653
N
0.840
Pm017596
Prunus mume
Pm017596
N
0.840
30174.m008784
Ricinus communis
30174.m008784
N
0.840
evm.TU.supercontig_37.96
Carica papaya
evm.TU.supercontig_37.96
N
0.840
LjT36B17.50.nd
Lotus japonicus
LjT36B17.50.nd
N
0.839
BGIOSGA016880
Oryza indica
BGIOSGA016880
N
0.834
GRMZM2G105137
Zea mays
GRMZM2G105137
N
0.834
OB04G27810
Oryza brachyantha
OB04G27810
N
0.834
OBART04G20790
Oryza barthii
OBART04G20790
N
0.834
OGLUM04G20730
Oryza glumaepatula
OGLUM04G20730
N
0.834
OMERI04G17240
Oryza meridionalis
OMERI04G17240
N
0.834
ONIVA04G19030
Oryza nivara
ONIVA04G19030
N
0.834
OPUNC04G18480
Oryza punctata
OPUNC04G18480
N
0.834
ORGLA04G0178400
Oryza glaberrima
ORGLA04G0178400
N
0.834
ORUFI04G22380
Oryza rufipogon
ORUFI04G22380
N
0.834
DUO1
Vitis vinifera
VIT_15s0021g02040
N
0.833
Traes_2AL_0A21FB42C
Triticum aestivum
Traes_2AL_0A21FB42C
N
0.827
Traes_2BL_855A1170C
Triticum aestivum
Traes_2BL_855A1170C
N
0.827
PRUPE_ppa016603mg
Prunus persica
PRUPE_ppa016603mg
N
0.824
Pm019530
Prunus mume
Pm019530
N
0.824
Pm031387
Prunus mume
Pm031387
N
0.824
Sb07g027160
Sorghum bicolor
Sb07g027160
N
0.821
MTR_4g029540
Medicago truncatula
MTR_4g029540
N
0.819
PRUPE_ppa020326mg
Prunus persica
PRUPE_ppa020326mg
N
0.819
GLYMA03G26830
Glycine max
GLYMA03G26830
N
0.816
Ciclev10021345m.g
Citrus clementina
Ciclev10021345m.g
N
0.816
orange1.1g038795m.g
Citrus sinensis
orange1.1g038795m.g
N
0.816
gene04800-v1.0-hybrid
Fragaria vesca
gene04800-v1.0-hybrid
N
0.815
Eucgr.E01581
Eucalyptus grandis
Eucgr.E01581
N
0.812
BRADI5G17600
Brachypodium distachyon
BRADI5G17600
N
0.810
POPTR_0002s14180
Populus trichocarpa
POPTR_0002s14180
N
0.810
Cagra.3527s0008
Capsella grandiflora
Cagra.3527s0008
N
0.810
Carubv10019483m.g
Capsella rubella
Carubv10019483m.g
N
0.810
SapurV1A.0033s0200
Salix purpurea
SapurV1A.0033s0200
N
0.810
GLYMA07G14480
Glycine max
GLYMA07G14480
N
0.807
Sb06g024510
Sorghum bicolor
Sb06g024510
N
0.806
Cla006831
Citrullus lanatus
Cla006831
N
0.806
GRMZM2G046443
Zea mays
GRMZM2G046443
N
0.804
Traes_2DL_912473A86
Triticum aestivum
Traes_2DL_912473A86
N
0.801
PGSC0003DMG400025720
Solanum tuberosum
PGSC0003DMG400025720
N
0.799
mgf019330m
Mimulus guttatus
mgf019330m
N
0.799
MTR_8g006470
Medicago truncatula
MTR_8g006470
N
0.798
gene12261-v1.0-hybrid
Fragaria vesca
gene12261-v1.0-hybrid
N
0.798
Bo8g095200
Brassica oleracea
Bo8g095200
N
0.797
Bra007536
Brassica rapa
Bra007536
N
0.797
GRMZM2G311059
Zea mays
GRMZM2G311059
N
0.796
cassava17368.m1
Manihot esculenta
cassava17368.m1
N
0.796
cassava19913.m1
Manihot esculenta
cassava19913.m1
N
0.796
Cucsa.121070
Cucumis sativus
Cucsa.121070
N
0.793
SapurV1A.0490s0170
Salix purpurea
SapurV1A.0490s0170
N
0.793
Gorai.004G165400
Gossypium raimondii
Gorai.004G165400
N
0.792
DUO1
Arabidopsis thaliana
AT3G60460
N
0.786
Bra003413
Brassica rapa
Bra003413
N
0.786
DUO1
Arabidopsis lyrata
fgenesh2_kg.5__2511__AT3G60460.1
N
0.786
POPTR_0014s05370
Populus trichocarpa
POPTR_0014s05370
N
0.786
POPTR_0014s05420
Populus trichocarpa
POPTR_0014s05420
N
0.786
Bostr.13158s0042
Boechera stricta
Bostr.13158s0042
N
0.786
Solyc01g090530.1
Solanum lycopersicum
Solyc01g090530.1
N
0.785
Bo6g077030
Brassica oleracea
Bo6g077030
N
0.777
Thhalv10006475m.g
Eutrema salsugineum
Thhalv10006475m.g
N
0.776
Solyc10g019260.1
Solanum lycopersicum
Solyc10g019260.1
N
0.764
TCM_014872
Theobroma cacao
TCM_014872
N
0.763
Aquca_002_00029
Aquilegia coerulea
Aquca_002_00029
N
0.763
Cla010897
Citrullus lanatus
Cla010897
N
0.761
Ca_18954
Cicer arietinum
Ca_18954
N
0.748
AMTR_s00111p00072510
Amborella trichopoda
AMTR_s00111p00072510
N
0.745
Aquca_081_00025
Aquilegia coerulea
Aquca_081_00025
N
0.745
Cucsa.094180
Cucumis sativus
Cucsa.094180
N
0.737
Ca_19557
Cicer arietinum
Ca_19557
N
0.735
GSMUA_Achr1G01660_001
Musa acuminata
GSMUA_Achr1G01660_001
N
0.734
GLYMA09G00371
Glycine max
GLYMA09G00371
N
0.730
GLYMA12G37026
Glycine max
GLYMA12G37026
N
0.721
Bostr.13158s0046
Boechera stricta
Bostr.13158s0046
N
0.717
Lus10009780.g
Linum usitatissimum
Lus10009780.g
N
0.709
SELMODRAFT_116971
Selaginella moellendorffii
SELMODRAFT_116971
N
0.695
SELMODRAFT_118852
Selaginella moellendorffii
SELMODRAFT_118852
N
0.695
OB08G27600
Oryza brachyantha
OB08G27600
N
0.683
LPERR04G16870
Leersia perrieri
LPERR04G16870
N
0.675
OLONG_013759
Oryza longistaminata
OLONG_013759
N
0.672
mgf004314m
Mimulus guttatus
mgf004314m
N
0.672
Gorai.003G112700
Gossypium raimondii
Gorai.003G112700
N
0.672