CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga01101
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ga01101
T289213_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.666
0.753
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.663
0.731
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.663
0.731
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga01101.1.p
Myb
90
137
KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL
Pavir.Ga01101.1.p
Myb
143
188
RGPFTTEEHNSILQLHAIVGNKWSMIAAQLPGRTDNEIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29983.m003281
Ricinus communis
29983.m003281
I
0.677
AtMYB74
Arabidopsis lyrata
Al_scaffold_0006_3584
I
0.663
Aquca_013_00356
Aquilegia coerulea
Aquca_013_00356
I
0.663
AtMYB74
Arabidopsis thaliana
AT4G05100
D
0.663
BGIOSGA008700
Oryza indica
BGIOSGA008700
I
0.755
BGIOSGA016822
Oryza indica
BGIOSGA016822
I
0.803
Bo1g051220
Brassica oleracea
Bo1g051220
I
0.676
Bo6g077600
Brassica oleracea
Bo6g077600
I
0.680
Bo9g076410
Brassica oleracea
Bo9g076410
I
0.663
Bostr.2983s0050
Boechera stricta
Bostr.2983s0050
I
0.670
Bra026281
Brassica rapa
Bra026281
I
0.676
Bra029553
Brassica rapa
Bra029553
I
0.663
BRADI1G51747
Brachypodium distachyon
BRADI1G51747
I
0.672
BRADI3G38807
Brachypodium distachyon
BRADI3G38807
I
0.664
BRADI3G49987
Brachypodium distachyon
BRADI3G49987
I
0.719
BRADI5G16707
Brachypodium distachyon
BRADI5G16707
I
0.825
Cagra.1981s0006
Capsella grandiflora
Cagra.1981s0006
I
0.672
Carubv10001366m.g
Capsella rubella
Carubv10001366m.g
I
0.672
Carubv10015750m.g
Capsella rubella
Carubv10015750m.g
I
0.661
cassava19500.valid.m1
Manihot esculenta
cassava19500.valid.m1
I
0.663
cassava2558.valid.m1
Manihot esculenta
cassava2558.valid.m1
I
0.707
cassava39892.m1
Manihot esculenta
cassava39892.m1
I
0.707
cassava41325.m1
Manihot esculenta
cassava41325.m1
I
0.676
Ca_14119
Cicer arietinum
Ca_14119
I
0.702
chr3.CM0711.160.nd
Lotus japonicus
chr3.CM0711.160.nd
I
0.702
Ciclev10003958m.g
Citrus clementina
Ciclev10003958m.g
I
0.661
Ciclev10015729m.g
Citrus clementina
Ciclev10015729m.g
I
0.663
Ciclev10017668m.g
Citrus clementina
Ciclev10017668m.g
I
0.707
Cla001360
Citrullus lanatus
Cla001360
I
0.663
Cla007838
Citrullus lanatus
Cla007838
I
0.680
Cla014359
Citrullus lanatus
Cla014359
I
0.672
Cucsa.045790
Cucumis sativus
Cucsa.045790
I
0.663
Cucsa.148040
Cucumis sativus
Cucsa.148040
I
0.680
Eucgr.A01772
Eucalyptus grandis
Eucgr.A01772
I
0.737
Eucgr.E03689
Eucalyptus grandis
Eucgr.E03689
I
0.666
Eucgr.E03819
Eucalyptus grandis
Eucgr.E03819
I
0.666
evm.TU.supercontig_18.232
Carica papaya
evm.TU.supercontig_18.232
I
0.666
F775_27854
Aegilops tauschii
F775_27854
I
0.732
gene30725-v1.0-hybrid
Fragaria vesca
gene30725-v1.0-hybrid
I
0.666
GLYMA02G12242
Glycine max
GLYMA02G12242
I
0.676
GLYMA06G45460
Glycine max
GLYMA06G45460
I
0.707
GLYMA12G11600
Glycine max
GLYMA12G11600
I
0.703
GLYMA12G32610
Glycine max
GLYMA12G32610
I
0.698
GLYMA13G37820
Glycine max
GLYMA13G37820
I
0.685
Gorai.003G039500
Gossypium raimondii
Gorai.003G039500
I
0.661
Gorai.005G206300
Gossypium raimondii
Gorai.005G206300
I
0.712
Gorai.008G151400
Gossypium raimondii
Gorai.008G151400
I
0.696
Gorai.009G174500
Gossypium raimondii
Gorai.009G174500
I
0.663
Gorai.010G149300
Gossypium raimondii
Gorai.010G149300
I
0.672
GRMZM2G031323
Zea mays
GRMZM2G031323
I
0.666
GRMZM2G040924
Zea mays
GRMZM2G040924
I
0.725
GRMZM2G111045
Zea mays
GRMZM2G111045
I
0.725
GRMZM2G123202
Zea mays
GRMZM2G123202
N
0.760
GRMZM2G166337
Zea mays
GRMZM2G166337
I
0.666
GSMUA_Achr11G04090_001
Musa acuminata
GSMUA_Achr11G04090_001
I
0.693
GSMUA_Achr5G12230_001
Musa acuminata
GSMUA_Achr5G12230_001
I
0.706
LPERR07G15930
Leersia perrieri
LPERR07G15930
I
0.666
Lus10039743.g
Linum usitatissimum
Lus10039743.g
I
0.712
MDP0000468201
Malus domestica
MDP0000468201
I
0.693
MDP0000492221
Malus domestica
MDP0000492221
I
0.663
MDP0000710259
Malus domestica
MDP0000710259
I
0.693
mgf018114m
Mimulus guttatus
mgf018114m
I
0.663
mgf023669m
Mimulus guttatus
mgf023669m
I
0.677
mgf025298m
Mimulus guttatus
mgf025298m
I
0.677
mgf026502m
Mimulus guttatus
mgf026502m
I
0.677
MLOC_39554
Hordeum vulgare
MLOC_39554
I
0.752
MLOC_68698
Hordeum vulgare
MLOC_68698
I
0.858
MTR_2g089620
Medicago truncatula
MTR_2g089620
I
0.685
OB02G32960
Oryza brachyantha
OB02G32960
I
0.755
OB04G26860
Oryza brachyantha
OB04G26860
I
0.803
OB07G24240
Oryza brachyantha
OB07G24240
I
0.666
OBART07G18450
Oryza barthii
OBART07G18450
I
0.666
OGLUM07G18250
Oryza glumaepatula
OGLUM07G18250
I
0.666
OMERI07G15370
Oryza meridionalis
OMERI07G15370
I
0.666
ONIVA04G17990
Oryza nivara
ONIVA04G17990
I
0.803
ONIVA06G20400
Oryza nivara
ONIVA06G20400
I
0.666
OPUNC07G17410
Oryza punctata
OPUNC07G17410
I
0.666
orange1.1g018154m.g
Citrus sinensis
orange1.1g018154m.g
I
0.663
orange1.1g035629m.g
Citrus sinensis
orange1.1g035629m.g
I
0.707
orange1.1g037998m.g
Citrus sinensis
orange1.1g037998m.g
I
0.661
ORGLA04G0169000
Oryza glaberrima
ORGLA04G0169000
I
0.803
ORGLA07G0148800
Oryza glaberrima
ORGLA07G0148800
I
0.666
ORUFI02G27000
Oryza rufipogon
ORUFI02G27000
I
0.755
ORUFI04G21320
Oryza rufipogon
ORUFI04G21320
I
0.803
ORUFI07G19200
Oryza rufipogon
ORUFI07G19200
I
0.666
OS02G0641900
Oryza sativa
OS02G0641900
I
0.755
OS07G0558100
Oryza sativa
OS07G0558100
I
0.663
Pavir.Aa01232
Panicum virgatum
Pavir.Aa01232
I
0.752
Pavir.Ab02419
Panicum virgatum
Pavir.Ab02419
I
0.755
Pavir.Ba00668
Panicum virgatum
Pavir.Ba00668
I
0.666
Pavir.Da02398
Panicum virgatum
Pavir.Da02398
I
0.665
Pavir.Gb00736
Panicum virgatum
Pavir.Gb00736
I
0.909
Pavir.J23197
Panicum virgatum
Pavir.J23197
I
0.672
Pavir.J38204
Panicum virgatum
Pavir.J38204
I
0.663
PGSC0003DMG400018331
Solanum tuberosum
PGSC0003DMG400018331
I
0.677
PGSC0003DMG400022399
Solanum tuberosum
PGSC0003DMG400022399
I
0.663
PGSC0003DMG400026628
Solanum tuberosum
PGSC0003DMG400026628
I
0.677
Pm009892
Prunus mume
Pm009892
I
0.663
Pm015309
Prunus mume
Pm015309
I
0.673
POPTR_0004s03310
Populus trichocarpa
POPTR_0004s03310
I
0.666
POPTR_0011s04120
Populus trichocarpa
POPTR_0011s04120
I
0.663
POPTR_0013s14480
Populus trichocarpa
POPTR_0013s14480
I
0.732
POPTR_0019s14070
Populus trichocarpa
POPTR_0019s14070
I
0.699
PRUPE_ppa007438mg
Prunus persica
PRUPE_ppa007438mg
I
0.663
PRUPE_ppa016708mg
Prunus persica
PRUPE_ppa016708mg
I
0.673
SapurV1A.0024s0060
Salix purpurea
SapurV1A.0024s0060
I
0.662
SapurV1A.0048s0210
Salix purpurea
SapurV1A.0048s0210
I
0.700
SapurV1A.1088s0050
Salix purpurea
SapurV1A.1088s0050
I
0.663
SapurV1A.3561s0010
Salix purpurea
SapurV1A.3561s0010
I
0.663
Sb02g036250
Sorghum bicolor
Sb02g036250
I
0.663
Sb04g033670
Sorghum bicolor
Sb04g033670
I
0.725
Sb06g023620
Sorghum bicolor
Sb06g023620
I
0.816
Si006790m.g
Setaria italica
Si006790m.g
I
0.672
Si017934m.g
Setaria italica
Si017934m.g
I
0.755
Si030273m.g
Setaria italica
Si030273m.g
I
0.666
Solyc02g079280.2
Solanum lycopersicum
Solyc02g079280.2
I
0.663
Solyc07g054840.2
Solanum lycopersicum
Solyc07g054840.2
I
0.677
Solyc10g008700.1
Solanum lycopersicum
Solyc10g008700.1
I
0.677
TCM_007904
Theobroma cacao
TCM_007904
I
0.707
TCM_030009
Theobroma cacao
TCM_030009
I
0.663
Thhalv10027463m.g
Eutrema salsugineum
Thhalv10027463m.g
I
0.676
Thhalv10029512m.g
Eutrema salsugineum
Thhalv10029512m.g
I
0.666
Traes_2AL_41B71F83C
Triticum aestivum
Traes_2AL_41B71F83C
I
0.858
Traes_2BL_79F1B50DF
Triticum aestivum
Traes_2BL_79F1B50DF
I
0.858
Traes_2DL_5A0300CE0
Triticum aestivum
Traes_2DL_5A0300CE0
I
0.858
Traes_6DL_41CBE9959
Triticum aestivum
Traes_6DL_41CBE9959
I
0.732
VIT_00s0203g00070
Vitis vinifera
VIT_00s0203g00070
I
0.663
AtMYB41
Vitis vinifera
VIT_12s0134g00570
I
0.707