Pavir.Ga01101 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ga01101 T289213_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.666 0.753
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.663 0.731
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.663 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01101.1.p Myb 90 137
Pavir.Ga01101.1.p Myb 143 188

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA040484 Oryza indica BGIOSGA040484 N
OBART04G03630 Oryza barthii OBART04G03630 N
OBART04G03640 Oryza barthii OBART04G03640 N
OBART04G03670 Oryza barthii OBART04G03670 N
OGLUM04G03020 Oryza glumaepatula OGLUM04G03020 N
OGLUM04G03030 Oryza glumaepatula OGLUM04G03030 N
OMERI04G03540 Oryza meridionalis OMERI04G03540 N
ONIVA04G02810 Oryza nivara ONIVA04G02810 N
ONIVA04G02840 Oryza nivara ONIVA04G02840 N
ORGLA04G0026900 Oryza glaberrima ORGLA04G0026900 N
ORGLA04G0027100 Oryza glaberrima ORGLA04G0027100 N
ORUFI04G04300 Oryza rufipogon ORUFI04G04300 N
OS04G0193200 Oryza sativa OS04G0193200 N