CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga01101
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ga01101
T289213_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.666
0.753
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.663
0.731
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.663
0.731
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga01101.1.p
Myb
90
137
KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL
Pavir.Ga01101.1.p
Myb
143
188
RGPFTTEEHNSILQLHAIVGNKWSMIAAQLPGRTDNEIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy