CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Gb00055
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Gb00055
T289221_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Gb00055.1.p
Myb
125
170
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ga00233
Panicum virgatum
Pavir.Ga00233
N
0.887
Si022762m.g
Setaria italica
Si022762m.g
N
0.878
OB04G36550
Oryza brachyantha
OB04G36550
N
0.793
Sb06g032880
Sorghum bicolor
Sb06g032880
N
0.791
GRMZM2G149958
Zea mays
GRMZM2G149958
I
0.784
BGIOSGA014092
Oryza indica
BGIOSGA014092
N
0.772
OBART04G29570
Oryza barthii
OBART04G29570
N
0.772
OMERI04G25000
Oryza meridionalis
OMERI04G25000
N
0.772
ONIVA04G28100
Oryza nivara
ONIVA04G28100
N
0.772
ORGLA04G0258700
Oryza glaberrima
ORGLA04G0258700
N
0.772
ORUFI04G31270
Oryza rufipogon
ORUFI04G31270
N
0.772
OS04G0676700
Oryza sativa
OS04G0676700
N
0.772
BRADI5G26110
Brachypodium distachyon
BRADI5G26110
N
0.759
GSMUA_Achr9G20620_001
Musa acuminata
GSMUA_Achr9G20620_001
I
0.756
OGLUM04G29490
Oryza glumaepatula
OGLUM04G29490
N
0.752
GLYMA20G01450
Glycine max
GLYMA20G01450
I
0.751
30131.m007263
Ricinus communis
30131.m007263
I
0.751
VIT_10s0071g00660
Vitis vinifera
VIT_10s0071g00660
I
0.750
mgf009460m
Mimulus guttatus
mgf009460m
I
0.750
OPUNC04G27130
Oryza punctata
OPUNC04G27130
N
0.748
GSMUA_Achr9G23760_001
Musa acuminata
GSMUA_Achr9G23760_001
I
0.746
GLYMA07G28310
Glycine max
GLYMA07G28310
I
0.745
PRUPE_ppa009396mg
Prunus persica
PRUPE_ppa009396mg
I
0.745
Cucsa.280970
Cucumis sativus
Cucsa.280970
I
0.745
Lus10013447.g
Linum usitatissimum
Lus10013447.g
I
0.742
PK13672.1
Cannabis sativa
PK13672.1
I
0.742
TCM_007672
Theobroma cacao
TCM_007672
I
0.740
cassava18614.valid.m1
Manihot esculenta
cassava18614.valid.m1
I
0.740
Gorai.005G212900
Gossypium raimondii
Gorai.005G212900
I
0.740
Gorai.008G147400
Gossypium raimondii
Gorai.008G147400
I
0.740
SapurV1A.0234s0050
Salix purpurea
SapurV1A.0234s0050
I
0.740
GSMUA_Achr1G17730_001
Musa acuminata
GSMUA_Achr1G17730_001
I
0.736
Lus10041001.g
Linum usitatissimum
Lus10041001.g
N
0.733
Gorai.013G067600
Gossypium raimondii
Gorai.013G067600
I
0.731
Aquca_035_00057
Aquilegia coerulea
Aquca_035_00057
I
0.730
evm.TU.supercontig_138.5
Carica papaya
evm.TU.supercontig_138.5
I
0.729
Eucgr.G02591
Eucalyptus grandis
Eucgr.G02591
I
0.724
gw1.13.182.1
Physcomitrella patens
gw1.13.182.1
N
0.722
Gorai.012G135600
Gossypium raimondii
Gorai.012G135600
I
0.710
Pm006046
Prunus mume
Pm006046
I
0.706
LPERR04G25100
Leersia perrieri
LPERR04G25100
N
0.704
Cla020348
Citrullus lanatus
Cla020348
I
0.704
GLYMA08G40020
Glycine max
GLYMA08G40020
I
0.703
GLYMA18G18140
Glycine max
GLYMA18G18140
I
0.703
Cla009230
Citrullus lanatus
Cla009230
I
0.703
Cucsa.013870
Cucumis sativus
Cucsa.013870
I
0.703
Ciclev10032259m.g
Citrus clementina
Ciclev10032259m.g
I
0.702
orange1.1g022439m.g
Citrus sinensis
orange1.1g022439m.g
I
0.702
SapurV1A.0333s0040
Salix purpurea
SapurV1A.0333s0040
I
0.698
PGSC0003DMG400025303
Solanum tuberosum
PGSC0003DMG400025303
I
0.697
Ca_05454
Cicer arietinum
Ca_05454
I
0.697
GLYMA10G42450
Glycine max
GLYMA10G42450
I
0.693
GLYMA20G24600
Glycine max
GLYMA20G24600
I
0.693
e_gw1.256.18.1
Physcomitrella patens
e_gw1.256.18.1
N
0.692
Ciclev10016071m.g
Citrus clementina
Ciclev10016071m.g
I
0.690
GSMUA_Achr10G06880_001
Musa acuminata
GSMUA_Achr10G06880_001
N
0.688
GSMUA_Achr9G21870_001
Musa acuminata
GSMUA_Achr9G21870_001
N
0.688
MTR_1g111830
Medicago truncatula
MTR_1g111830
I
0.686
Solyc04g008870.2
Solanum lycopersicum
Solyc04g008870.2
N
0.683
Ca_19000
Cicer arietinum
Ca_19000
I
0.683
SapurV1A.0450s0110
Salix purpurea
SapurV1A.0450s0110
I
0.677
SapurV1A.1671s0040
Salix purpurea
SapurV1A.1671s0040
I
0.677
gene00786-v1.0-hybrid
Fragaria vesca
gene00786-v1.0-hybrid
N
0.671
VIT_06s0080g00790
Vitis vinifera
VIT_06s0080g00790
I
0.670
Aquca_072_00078
Aquilegia coerulea
Aquca_072_00078
N
0.663
Ciclev10029205m.g
Citrus clementina
Ciclev10029205m.g
N
0.663
orange1.1g026855m.g
Citrus sinensis
orange1.1g026855m.g
N
0.663
Eucgr.J00349
Eucalyptus grandis
Eucgr.J00349
N
0.662