Pavir.Ia03542 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ia03542 T289263_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYBP_MAIZE
M11057_2.00 		Zea mays
ACCWACCHN
NDGGTWGGT		 Transfac
Matys et al.(2006)
P$P_01 		0.766 0.928
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03542.1.p Myb 14 61
Pavir.Ia03542.1.p Myb 67 88

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLONG_002280 Oryza longistaminata OLONG_002280 I 0.843
GRMZM2G016020 Zea mays GRMZM2G016020 I 0.821
GRMZM2G129872 Zea mays GRMZM2G129872 I 0.821
cassava34998.m1 Manihot esculenta cassava34998.m1 I 0.821
MYBP_MAIZE Zea mays MYBP_MAIZE D 0.766
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.761
Cagra.0551s0003 Capsella grandiflora Cagra.0551s0003 I 0.751
BGIOSGA003347 Oryza indica BGIOSGA003347 I 0.745
29889.m003258 Ricinus communis 29889.m003258 I 0.744
CM0385.290.nd Lotus japonicus CM0385.290.nd I 0.731
LjSGA_102038.1 Lotus japonicus LjSGA_102038.1 I 0.717
30076.m004682 Ricinus communis 30076.m004682 I 0.710
evm.TU.supercontig_18.16 Carica papaya evm.TU.supercontig_18.16 I 0.709
Pavir.Ea01343 Panicum virgatum Pavir.Ea01343 I 0.703
F775_20860 Aegilops tauschii F775_20860 I 0.694
mgf024704m Mimulus guttatus mgf024704m N 0.693
SELMODRAFT_39507 Selaginella moellendorffii SELMODRAFT_39507 N 0.686
SELMODRAFT_39516 Selaginella moellendorffii SELMODRAFT_39516 N 0.686
SELMODRAFT_39454 Selaginella moellendorffii SELMODRAFT_39454 I 0.682
SELMODRAFT_39481 Selaginella moellendorffii SELMODRAFT_39481 I 0.682
Si039538m.g Setaria italica Si039538m.g I 0.677
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I 0.677
PDK_20s1587411g001 Phoenix dactylifera PDK_20s1587411g001 N 0.677
F775_25212 Aegilops tauschii F775_25212 N 0.672
GLYMA19G24451 Glycine max GLYMA19G24451 N 0.672
Traes_4BL_F7B9CBA99 Triticum aestivum Traes_4BL_F7B9CBA99 N 0.672
SapurV1A.0553s0120 Salix purpurea SapurV1A.0553s0120 N 0.672
SapurV1A.3841s0010 Salix purpurea SapurV1A.3841s0010 N 0.670
ORUFI03G21780 Oryza rufipogon ORUFI03G21780 N 0.669
AMTR_s00048p00210040 Amborella trichopoda AMTR_s00048p00210040 N 0.668