CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J05460
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J05460
T289331_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.672
0.736
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.663
0.758
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J05460.1.p
Myb
22
69
KGPWTLEEDIILVGYISEHGEGSWDNLARAAGLNRNGKSCRLRWLNYL
Pavir.J05460.1.p
Myb
76
119
GGITPAEDAAIRELHAALGNRWSKISKHLPGRTDNEIKNYWRTR
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Eb01665
Panicum virgatum
Pavir.Eb01665
N
0.868
Si003841m.g
Setaria italica
Si003841m.g
I
0.857
Pavir.J35999
Panicum virgatum
Pavir.J35999
I
0.818
BGIOSGA004072
Oryza indica
BGIOSGA004072
I
0.763
OB01G33330
Oryza brachyantha
OB01G33330
I
0.763
OBART01G24030
Oryza barthii
OBART01G24030
I
0.763
OGLUM01G27780
Oryza glumaepatula
OGLUM01G27780
I
0.763
OMERI01G22060
Oryza meridionalis
OMERI01G22060
I
0.763
ONIVA01G27030
Oryza nivara
ONIVA01G27030
I
0.763
OPUNC01G24010
Oryza punctata
OPUNC01G24010
I
0.763
ORGLA01G0193500
Oryza glaberrima
ORGLA01G0193500
I
0.763
ORUFI01G26910
Oryza rufipogon
ORUFI01G26910
I
0.763
OS01G0637800
Oryza sativa
OS01G0637800
I
0.763
Pavir.Eb01664
Panicum virgatum
Pavir.Eb01664
N
0.759
BRADI2G44770
Brachypodium distachyon
BRADI2G44770
I
0.748
GRMZM2G143328
Zea mays
GRMZM2G143328
I
0.745
TRIUR3_25064
Triticum urartu
TRIUR3_25064
I
0.742
MLOC_5568
Hordeum vulgare
MLOC_5568
I
0.738
Si003965m.g
Setaria italica
Si003965m.g
I
0.738
Sb03g029050
Sorghum bicolor
Sb03g029050
I
0.737
F775_02242
Aegilops tauschii
F775_02242
I
0.731
TRAES3BF026200120CFD_g
Triticum aestivum
TRAES3BF026200120CFD_g
I
0.731
Traes_3DL_429583AEC
Triticum aestivum
Traes_3DL_429583AEC
I
0.731
LPERR01G20550
Leersia perrieri
LPERR01G20550
I
0.719
Eucgr.J02217
Eucalyptus grandis
Eucgr.J02217
I
0.705
SapurV1A.0571s0200
Salix purpurea
SapurV1A.0571s0200
I
0.698
POPTR_0001s35200
Populus trichocarpa
POPTR_0001s35200
I
0.694
GLYMA07G37142
Glycine max
GLYMA07G37142
I
0.682
GLYMA09G04370
Glycine max
GLYMA09G04370
I
0.682
GLYMA17G03480
Glycine max
GLYMA17G03480
I
0.682
MTR_2g034790
Medicago truncatula
MTR_2g034790
I
0.682
MTR_4g121460
Medicago truncatula
MTR_4g121460
I
0.682
Eucgr.I01782
Eucalyptus grandis
Eucgr.I01782
I
0.679
GLYMA19G14270
Glycine max
GLYMA19G14270
I
0.678
GLYMA16G07960
Glycine max
GLYMA16G07960
I
0.677
GLYMA19G14230
Glycine max
GLYMA19G14230
I
0.677
GSMUA_Achr9G07000_001
Musa acuminata
GSMUA_Achr9G07000_001
I
0.677
PRUPE_ppa011751mg
Prunus persica
PRUPE_ppa011751mg
I
0.677
TCM_016901
Theobroma cacao
TCM_016901
I
0.677
Pm015692
Prunus mume
Pm015692
I
0.677
Gorai.001G263200
Gossypium raimondii
Gorai.001G263200
I
0.677
Gorai.006G030800
Gossypium raimondii
Gorai.006G030800
I
0.677
Lus10022259.g
Linum usitatissimum
Lus10022259.g
I
0.677
MTR_6g006030
Medicago truncatula
MTR_6g006030
I
0.675
Ciclev10016820m.g
Citrus clementina
Ciclev10016820m.g
I
0.675
orange1.1g045384m.g
Citrus sinensis
orange1.1g045384m.g
I
0.675
GLYMA15G15400
Glycine max
GLYMA15G15400
I
0.673
MYB24
Arabidopsis thaliana
AT5G40350
D
0.672
GLYMA05G08690
Glycine max
GLYMA05G08690
I
0.670
GLYMA19G00930
Glycine max
GLYMA19G00930
I
0.670
PGSC0003DMG400000485
Solanum tuberosum
PGSC0003DMG400000485
I
0.670
MTR_7g035075
Medicago truncatula
MTR_7g035075
I
0.668
evm.TU.supercontig_186.7
Carica papaya
evm.TU.supercontig_186.7
I
0.668
gene28435-v1.0-hybrid
Fragaria vesca
gene28435-v1.0-hybrid
I
0.668
MDP0000344978
Malus domestica
MDP0000344978
I
0.668
Bo5g043390
Brassica oleracea
Bo5g043390
I
0.667
MTR_1g086510
Medicago truncatula
MTR_1g086510
I
0.667
Ca_03536
Cicer arietinum
Ca_03536
I
0.667
VIT_14s0066g01090
Vitis vinifera
VIT_14s0066g01090
I
0.666
Sb03g012550
Sorghum bicolor
Sb03g012550
I
0.664
Si002107m.g
Setaria italica
Si002107m.g
I
0.664
cassava40469.m1
Manihot esculenta
cassava40469.m1
I
0.664
GRMZM2G051528
Zea mays
GRMZM2G051528
I
0.663
MYB05_ANTMA
Antirrhinum majus
MYB05_ANTMA
D
0.663
GSMUA_Achr1G27270_001
Musa acuminata
GSMUA_Achr1G27270_001
I
0.662
Aquca_002_00135
Aquilegia coerulea
Aquca_002_00135
I
0.662