CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J10177
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J10177
T289355_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J10177.1.p
Myb
266
316
RVQWPGELHRKFVEAVNQIGMDRAVPKKILEVMNVDSLTRENVASHLQKYR
Pavir.J10177.2.p
Myb
195
245
RVQWPGELHRKFVEAVNQIGMDRAVPKKILEVMNVDSLTRENVASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
149 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Db00757
Panicum virgatum
Pavir.Db00757
N
0.909
Si007844m.g
Setaria italica
Si007844m.g
I
0.898
Sb10g024180
Sorghum bicolor
Sb10g024180
N
0.811
Si008512m.g
Setaria italica
Si008512m.g
N
0.802
GRMZM2G401835
Zea mays
GRMZM2G401835
I
0.766
Sb05g004150
Sorghum bicolor
Sb05g004150
I
0.751
Pavir.Ia00770
Panicum virgatum
Pavir.Ia00770
N
0.747
GRMZM2G360523
Zea mays
GRMZM2G360523
I
0.733
RR23
Oryza indica
BGIOSGA005436
I
0.725
RR22
Oryza indica
BGIOSGA022430
I
0.725
F775_14758
Aegilops tauschii
F775_14758
I
0.725
F775_19079
Aegilops tauschii
F775_19079
I
0.725
GRMZM2G409974
Zea mays
GRMZM2G409974
I
0.725
GRMZM2G479110
Zea mays
GRMZM2G479110
I
0.725
LPERR06G04900
Leersia perrieri
LPERR06G04900
I
0.725
MLOC_11341
Hordeum vulgare
MLOC_11341
I
0.725
MLOC_61880
Hordeum vulgare
MLOC_61880
I
0.725
OB02G42700
Oryza brachyantha
OB02G42700
I
0.725
OB06G14930
Oryza brachyantha
OB06G14930
I
0.725
OBART06G05360
Oryza barthii
OBART06G05360
I
0.725
OGLUM06G05540
Oryza glumaepatula
OGLUM06G05540
I
0.725
OMERI06G06380
Oryza meridionalis
OMERI06G06380
I
0.725
ONIVA06G06160
Oryza nivara
ONIVA06G06160
I
0.725
OPUNC06G05150
Oryza punctata
OPUNC06G05150
I
0.725
ORGLA02G0311700
Oryza glaberrima
ORGLA02G0311700
I
0.725
ORGLA06G0048800
Oryza glaberrima
ORGLA06G0048800
I
0.725
ORUFI06G05490
Oryza rufipogon
ORUFI06G05490
I
0.725
RR23
Oryza sativa
OS02G0796500
I
0.725
RR22
Oryza sativa
OS06G0183100
I
0.725
Sb04g035980
Sorghum bicolor
Sb04g035980
I
0.725
Sb10g005580
Sorghum bicolor
Sb10g005580
I
0.725
Si006013m.g
Setaria italica
Si006013m.g
I
0.725
Si016546m.g
Setaria italica
Si016546m.g
I
0.725
TCM_036926
Theobroma cacao
TCM_036926
I
0.725
Traes_7AS_DECB8080D
Triticum aestivum
Traes_7AS_DECB8080D
I
0.725
Traes_7DS_22DE624A5
Triticum aestivum
Traes_7DS_22DE624A5
I
0.725
Traes_7DS_327FBC2CA
Triticum aestivum
Traes_7DS_327FBC2CA
I
0.725
TRIUR3_26858
Triticum urartu
TRIUR3_26858
I
0.725
TRIUR3_28229
Triticum urartu
TRIUR3_28229
I
0.725
Pavir.Da02067
Panicum virgatum
Pavir.Da02067
I
0.725
Pavir.J08270
Panicum virgatum
Pavir.J08270
I
0.725
Pavir.J35630
Panicum virgatum
Pavir.J35630
I
0.725
chr5.CM0345.260.nd
Lotus japonicus
chr5.CM0345.260.nd
I
0.725
Gorai.010G243900
Gossypium raimondii
Gorai.010G243900
I
0.718
GLYMA04G06650
Glycine max
GLYMA04G06650
I
0.717
GLYMA06G06730
Glycine max
GLYMA06G06730
I
0.717
GLYMA09G14650
Glycine max
GLYMA09G14650
I
0.717
GLYMA14G13320
Glycine max
GLYMA14G13320
I
0.717
GLYMA15G24770
Glycine max
GLYMA15G24770
I
0.717
PRUPE_ppa024819mg
Prunus persica
PRUPE_ppa024819mg
I
0.717
TCM_037098
Theobroma cacao
TCM_037098
I
0.717
VIT_04s0008g05900
Vitis vinifera
VIT_04s0008g05900
I
0.717
Cla021325
Citrullus lanatus
Cla021325
I
0.717
Pm005710
Prunus mume
Pm005710
I
0.717
29737.m001227
Ricinus communis
29737.m001227
I
0.717
29848.m004559
Ricinus communis
29848.m004559
I
0.717
cassava18404.valid.m1
Manihot esculenta
cassava18404.valid.m1
I
0.717
cassava18405.valid.m1
Manihot esculenta
cassava18405.valid.m1
I
0.717
cassava262.valid.m1
Manihot esculenta
cassava262.valid.m1
I
0.717
cassava8114.valid.m1
Manihot esculenta
cassava8114.valid.m1
I
0.717
Cucsa.271670
Cucumis sativus
Cucsa.271670
I
0.717
Aquca_016_00168
Aquilegia coerulea
Aquca_016_00168
I
0.717
Ciclev10007639m.g
Citrus clementina
Ciclev10007639m.g
I
0.717
orange1.1g005465m.g
Citrus sinensis
orange1.1g005465m.g
I
0.717
SapurV1A.0730s0060
Salix purpurea
SapurV1A.0730s0060
I
0.717
PDK_20s1342911g003
Phoenix dactylifera
PDK_20s1342911g003
I
0.717
PDK_20s1782651g001
Phoenix dactylifera
PDK_20s1782651g001
I
0.717
Ciclev10007648m.g
Citrus clementina
Ciclev10007648m.g
I
0.710
orange1.1g005719m.g
Citrus sinensis
orange1.1g005719m.g
I
0.710
PGSC0003DMG400040318
Solanum tuberosum
PGSC0003DMG400040318
N
0.705
Gorai.009G061000
Gossypium raimondii
Gorai.009G061000
I
0.703
PGSC0003DMG400003196
Solanum tuberosum
PGSC0003DMG400003196
I
0.702
Solyc07g005140.2
Solanum lycopersicum
Solyc07g005140.2
I
0.702
VIT_11s0206g00060
Vitis vinifera
VIT_11s0206g00060
I
0.702
mgf001591m
Mimulus guttatus
mgf001591m
I
0.702
mgf014863m
Mimulus guttatus
mgf014863m
I
0.702
Eucgr.C00380
Eucalyptus grandis
Eucgr.C00380
I
0.702
evm.TU.supercontig_46.117
Carica papaya
evm.TU.supercontig_46.117
I
0.702
Gorai.004G291100
Gossypium raimondii
Gorai.004G291100
I
0.702
Gorai.009G054200
Gossypium raimondii
Gorai.009G054200
I
0.702
Bo2g028820
Brassica oleracea
Bo2g028820
I
0.699
Bra020390
Brassica rapa
Bra020390
I
0.699
Bostr.26833s0442
Boechera stricta
Bostr.26833s0442
I
0.699
Cagra.0891s0003
Capsella grandiflora
Cagra.0891s0003
I
0.699
Carubv10026052m.g
Capsella rubella
Carubv10026052m.g
I
0.699
Thhalv10015296m.g
Eutrema salsugineum
Thhalv10015296m.g
I
0.699
chr6.CM0037.920.nc
Lotus japonicus
chr6.CM0037.920.nc
I
0.699
PDK_20s1362511g001
Phoenix dactylifera
PDK_20s1362511g001
I
0.699
Traes_7AS_503B57D77
Triticum aestivum
Traes_7AS_503B57D77
I
0.698
SELMODRAFT_447635
Selaginella moellendorffii
SELMODRAFT_447635
I
0.695
gene10041-v1.0-hybrid
Fragaria vesca
gene10041-v1.0-hybrid
I
0.695
BRADI3G06120
Brachypodium distachyon
BRADI3G06120
I
0.692
F775_13501
Aegilops tauschii
F775_13501
I
0.692
GRMZM2G060485
Zea mays
GRMZM2G060485
I
0.692
MLOC_3955
Hordeum vulgare
MLOC_3955
I
0.692
MTR_3g106220
Medicago truncatula
MTR_3g106220
I
0.692
POPTR_0006s20220
Populus trichocarpa
POPTR_0006s20220
I
0.692
POPTR_0018s11960
Populus trichocarpa
POPTR_0018s11960
I
0.692
Sb04g005580
Sorghum bicolor
Sb04g005580
I
0.692
Si016630m.g
Setaria italica
Si016630m.g
I
0.692
Traes_6AS_A42E71A00
Triticum aestivum
Traes_6AS_A42E71A00
I
0.692
Traes_6BS_B50BEBC7E
Triticum aestivum
Traes_6BS_B50BEBC7E
I
0.692
Traes_6DS_EF4A57213
Triticum aestivum
Traes_6DS_EF4A57213
I
0.692
TRIUR3_31924
Triticum urartu
TRIUR3_31924
I
0.692
Eucgr.C04050
Eucalyptus grandis
Eucgr.C04050
I
0.692
Pavir.Aa03151
Panicum virgatum
Pavir.Aa03151
I
0.692
Pavir.Ab00568
Panicum virgatum
Pavir.Ab00568
I
0.692
SapurV1A.0100s0230
Salix purpurea
SapurV1A.0100s0230
I
0.692
SapurV1A.0347s0250
Salix purpurea
SapurV1A.0347s0250
I
0.692
CM1729.100.nc
Lotus japonicus
CM1729.100.nc
I
0.688
MTR_1g013170
Medicago truncatula
MTR_1g013170
I
0.686
PGSC0003DMG400007823
Solanum tuberosum
PGSC0003DMG400007823
I
0.684
PRUPE_ppa018934mg
Prunus persica
PRUPE_ppa018934mg
I
0.684
Solyc12g010330.1
Solanum lycopersicum
Solyc12g010330.1
I
0.684
Pm027701
Prunus mume
Pm027701
I
0.684
RR24
Oryza indica
BGIOSGA007015
I
0.677
LPERR02G05460
Leersia perrieri
LPERR02G05460
I
0.677
OB02G15530
Oryza brachyantha
OB02G15530
I
0.677
OBART02G06200
Oryza barthii
OBART02G06200
I
0.677
OGLUM02G06200
Oryza glumaepatula
OGLUM02G06200
I
0.677
OLONG_007266
Oryza longistaminata
OLONG_007266
I
0.677
OMERI02G07120
Oryza meridionalis
OMERI02G07120
I
0.677
ONIVA02G07230
Oryza nivara
ONIVA02G07230
I
0.677
ORGLA02G0057500
Oryza glaberrima
ORGLA02G0057500
I
0.677
ORUFI02G06340
Oryza rufipogon
ORUFI02G06340
I
0.677
RR24
Oryza sativa
OS02G0182100
I
0.677
Pavir.Db00644
Panicum virgatum
Pavir.Db00644
I
0.676
GSMUA_AchrUn_randomG18820_001
Musa acuminata
GSMUA_AchrUn_randomG18820_001
I
0.672
OLONG_005451
Oryza longistaminata
OLONG_005451
I
0.672
Traes_7AS_1318B59D3
Triticum aestivum
Traes_7AS_1318B59D3
I
0.672
Traes_7BS_17C8D2707
Triticum aestivum
Traes_7BS_17C8D2707
I
0.672
mgf018559m
Mimulus guttatus
mgf018559m
I
0.670
Sb08g006300
Sorghum bicolor
Sb08g006300
N
0.668
BRADI1G47400
Brachypodium distachyon
BRADI1G47400
I
0.665
BRADI3G54120
Brachypodium distachyon
BRADI3G54120
I
0.665
MLOC_76165
Hordeum vulgare
MLOC_76165
I
0.665
Traes_6BL_790C095EE
Triticum aestivum
Traes_6BL_790C095EE
I
0.665
Traes_6DL_D1C9CE275
Triticum aestivum
Traes_6DL_D1C9CE275
I
0.665
GSMUA_Achr11G08310_001
Musa acuminata
GSMUA_Achr11G08310_001
I
0.664
GSMUA_Achr3G13400_001
Musa acuminata
GSMUA_Achr3G13400_001
I
0.664
evm.TU.supercontig_127.10
Carica papaya
evm.TU.supercontig_127.10
I
0.664
GLK2
Arabidopsis thaliana
AT5G44190
I
0.661
fgenesh2_kg.8__391__AT5G44190.1
Arabidopsis lyrata
fgenesh2_kg.8__391__AT5G44190.1
I
0.661
Bostr.3148s0040
Boechera stricta
Bostr.3148s0040
I
0.661
Cagra.0381s0008
Capsella grandiflora
Cagra.0381s0008
I
0.661
Carubv10026528m.g
Capsella rubella
Carubv10026528m.g
I
0.661
Lus10036303.g
Linum usitatissimum
Lus10036303.g
I
0.661
Thhalv10003223m.g
Eutrema salsugineum
Thhalv10003223m.g
I
0.661