CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J10623
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J10623
T289359_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G05090
M02305_2.00
Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN
PBM
Weirauch et al.(2014)
pTH7104
0.744
0.809
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J10623.1.p
Myb
21
71
RMVWTPELHHRFVEAVAHLGDKGAVPKAIVRLMNVEGLTRENVASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
241 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb03g039610
Sorghum bicolor
Sb03g039610
I
0.909
Si002016m.g
Setaria italica
Si002016m.g
I
0.909
Pavir.J06465
Panicum virgatum
Pavir.J06465
I
0.909
GRMZM2G074908
Zea mays
GRMZM2G074908
I
0.860
BGIOSGA004786
Oryza indica
BGIOSGA004786
I
0.820
LPERR01G31830
Leersia perrieri
LPERR01G31830
I
0.820
OBART01G37040
Oryza barthii
OBART01G37040
I
0.820
OGLUM01G41000
Oryza glumaepatula
OGLUM01G41000
I
0.820
OMERI01G34110
Oryza meridionalis
OMERI01G34110
I
0.820
ONIVA01G41940
Oryza nivara
ONIVA01G41940
I
0.820
OPUNC01G35910
Oryza punctata
OPUNC01G35910
I
0.820
ORGLA01G0309000
Oryza glaberrima
ORGLA01G0309000
I
0.820
ORUFI01G40390
Oryza rufipogon
ORUFI01G40390
I
0.820
OS01G0844900
Oryza sativa
OS01G0844900
I
0.820
F775_08927
Aegilops tauschii
F775_08927
I
0.798
MLOC_24962
Hordeum vulgare
MLOC_24962
I
0.798
OLONG_001321
Oryza longistaminata
OLONG_001321
I
0.798
AMTR_s00101p00128190
Amborella trichopoda
AMTR_s00101p00128190
I
0.783
POPTR_0006s03340
Populus trichocarpa
POPTR_0006s03340
I
0.783
POPTR_0016s03240
Populus trichocarpa
POPTR_0016s03240
I
0.783
SELMODRAFT_36646
Selaginella moellendorffii
SELMODRAFT_36646
I
0.783
gw1.104.128.1
Physcomitrella patens
gw1.104.128.1
I
0.783
gw1.27.80.1
Physcomitrella patens
gw1.27.80.1
I
0.783
gw1.29.164.1
Physcomitrella patens
gw1.29.164.1
I
0.783
gw1.29.165.1
Physcomitrella patens
gw1.29.165.1
I
0.783
EuGene.0600010100
Micromonas sp RCC299
EuGene.0600010100
I
0.783
SapurV1A.0159s0180
Salix purpurea
SapurV1A.0159s0180
I
0.783
SapurV1A.1916s0020
Salix purpurea
SapurV1A.1916s0020
I
0.783
EuGene.0000090108
Micromonas pusilla
EuGene.0000090108
I
0.768
BRADI2G54787
Brachypodium distachyon
BRADI2G54787
I
0.767
estExt_fgenesh2_pg.C_Chr_120081
Micromonas sp RCC299
estExt_fgenesh2_pg.C_Chr_120081
I
0.753
MYBC1
Arabidopsis thaliana
AT2G40970
I
0.744
AT3G10760
Arabidopsis thaliana
AT3G10760
I
0.744
AT5G05090
Arabidopsis thaliana
AT5G05090
D
0.744
BGIOSGA018058
Oryza indica
BGIOSGA018058
I
0.744
Bo3g003150
Brassica oleracea
Bo3g003150
I
0.744
Bo4g012890
Brassica oleracea
Bo4g012890
I
0.744
Bo5g019990
Brassica oleracea
Bo5g019990
I
0.744
Bo5g137150
Brassica oleracea
Bo5g137150
I
0.744
Bo9g177390
Brassica oleracea
Bo9g177390
I
0.744
Bra004593
Brassica rapa
Bra004593
I
0.744
Bra005837
Brassica rapa
Bra005837
I
0.744
Bra009087
Brassica rapa
Bra009087
I
0.744
Bra034144
Brassica rapa
Bra034144
I
0.744
BRADI2G25380
Brachypodium distachyon
BRADI2G25380
I
0.744
GLYMA02G21820
Glycine max
GLYMA02G21820
I
0.744
GLYMA03G27890
Glycine max
GLYMA03G27890
I
0.744
GLYMA19G30700
Glycine max
GLYMA19G30700
I
0.744
GRMZM2G398055
Zea mays
GRMZM2G398055
I
0.744
GSMUA_Achr11G14170_001
Musa acuminata
GSMUA_Achr11G14170_001
I
0.744
GSMUA_Achr2G01920_001
Musa acuminata
GSMUA_Achr2G01920_001
I
0.744
GSMUA_Achr5G27500_001
Musa acuminata
GSMUA_Achr5G27500_001
I
0.744
GSMUA_Achr8G05880_001
Musa acuminata
GSMUA_Achr8G05880_001
I
0.744
LPERR05G13030
Leersia perrieri
LPERR05G13030
I
0.744
MLOC_24056
Hordeum vulgare
MLOC_24056
I
0.744
MTR_7g089010
Medicago truncatula
MTR_7g089010
I
0.744
OMERI05G06680
Oryza meridionalis
OMERI05G06680
I
0.744
ONIVA05G17050
Oryza nivara
ONIVA05G17050
I
0.744
OPUNC05G14480
Oryza punctata
OPUNC05G14480
I
0.744
ORGLA05G0141400
Oryza glaberrima
ORGLA05G0141400
I
0.744
OS05G0412000
Oryza sativa
OS05G0412000
I
0.744
PGSC0003DMG400007174
Solanum tuberosum
PGSC0003DMG400007174
I
0.744
PRUPE_ppa026577mg
Prunus persica
PRUPE_ppa026577mg
I
0.744
scaffold_301238.1
Arabidopsis lyrata
scaffold_301238.1
I
0.744
MYBC1
Arabidopsis lyrata
scaffold_402901.1
I
0.744
scaffold_600469.1
Arabidopsis lyrata
scaffold_600469.1
I
0.744
Solyc10g078310.1
Solanum lycopersicum
Solyc10g078310.1
I
0.744
VIT_08s0040g00900
Vitis vinifera
VIT_08s0040g00900
I
0.744
Ca_07144
Cicer arietinum
Ca_07144
I
0.744
Cla012286
Citrullus lanatus
Cla012286
I
0.744
Cla017714
Citrullus lanatus
Cla017714
I
0.744
Pm031149
Prunus mume
Pm031149
I
0.744
30180.m001019
Ricinus communis
30180.m001019
I
0.744
cassava20582.m1
Manihot esculenta
cassava20582.m1
I
0.744
Cucsa.140020
Cucumis sativus
Cucsa.140020
I
0.744
Cucsa.358530
Cucumis sativus
Cucsa.358530
I
0.744
mgf014801m
Mimulus guttatus
mgf014801m
I
0.744
Aquca_009_00074
Aquilegia coerulea
Aquca_009_00074
I
0.744
Bostr.13129s0456
Boechera stricta
Bostr.13129s0456
I
0.744
Bostr.19424s0999
Boechera stricta
Bostr.19424s0999
I
0.744
Bostr.27991s0013
Boechera stricta
Bostr.27991s0013
I
0.744
Bostr.9345s0035
Boechera stricta
Bostr.9345s0035
I
0.744
Cagra.0834s0003
Capsella grandiflora
Cagra.0834s0003
I
0.744
Cagra.1504s0014
Capsella grandiflora
Cagra.1504s0014
I
0.744
Cagra.1642s0062
Capsella grandiflora
Cagra.1642s0062
I
0.744
Carubv10003130m.g
Capsella rubella
Carubv10003130m.g
I
0.744
Carubv10014134m.g
Capsella rubella
Carubv10014134m.g
I
0.744
Carubv10024859m.g
Capsella rubella
Carubv10024859m.g
I
0.744
Ciclev10012203m.g
Citrus clementina
Ciclev10012203m.g
I
0.744
Eucgr.A02201
Eucalyptus grandis
Eucgr.A02201
I
0.744
Eucgr.K01670
Eucalyptus grandis
Eucgr.K01670
I
0.744
evm.TU.supercontig_92.70
Carica papaya
evm.TU.supercontig_92.70
I
0.744
gene17673-v1.0-hybrid
Fragaria vesca
gene17673-v1.0-hybrid
I
0.744
Gorai.002G230800
Gossypium raimondii
Gorai.002G230800
I
0.744
Gorai.007G351500
Gossypium raimondii
Gorai.007G351500
I
0.744
Lus10010442.g
Linum usitatissimum
Lus10010442.g
I
0.744
Lus10012102.g
Linum usitatissimum
Lus10012102.g
I
0.744
Lus10027291.g
Linum usitatissimum
Lus10027291.g
I
0.744
Lus10038996.g
Linum usitatissimum
Lus10038996.g
I
0.744
MDP0000846313
Malus domestica
MDP0000846313
I
0.744
orange1.1g020690m.g
Citrus sinensis
orange1.1g020690m.g
I
0.744
Thhalv10014387m.g
Eutrema salsugineum
Thhalv10014387m.g
I
0.744
Thhalv10017945m.g
Eutrema salsugineum
Thhalv10017945m.g
I
0.744
Thhalv10021133m.g
Eutrema salsugineum
Thhalv10021133m.g
I
0.744
PK23977.1
Cannabis sativa
PK23977.1
I
0.744
chr1.CM0269.130.nd
Lotus japonicus
chr1.CM0269.130.nd
I
0.744
AMTR_s00012p00251530
Amborella trichopoda
AMTR_s00012p00251530
I
0.741
PCL1
Arabidopsis thaliana
AT3G46640
I
0.741
BOA
Arabidopsis thaliana
AT5G59570
I
0.741
BGIOSGA000023
Oryza indica
BGIOSGA000023
I
0.741
Bo1g070860
Brassica oleracea
Bo1g070860
I
0.741
Bo3g132770
Brassica oleracea
Bo3g132770
I
0.741
Bra018204
Brassica rapa
Bra018204
I
0.741
Bra033809
Brassica rapa
Bra033809
I
0.741
BRADI2G62067
Brachypodium distachyon
BRADI2G62067
I
0.741
PCL1
Arabidopsis lyrata
fgenesh2_kg.5__1030__AT3G46640.2
I
0.741
fgenesh2_kg.8__1908__AT5G59570.1
Arabidopsis lyrata
fgenesh2_kg.8__1908__AT5G59570.1
I
0.741
GLYMA11G14490
Glycine max
GLYMA11G14490
I
0.741
GLYMA12G06406
Glycine max
GLYMA12G06406
I
0.741
GRMZM2G067702
Zea mays
GRMZM2G067702
I
0.741
GSMUA_Achr10G02420_001
Musa acuminata
GSMUA_Achr10G02420_001
I
0.741
GSMUA_Achr5G07060_001
Musa acuminata
GSMUA_Achr5G07060_001
I
0.741
LPERR01G39850
Leersia perrieri
LPERR01G39850
I
0.741
MLOC_37446
Hordeum vulgare
MLOC_37446
I
0.741
MTR_4g064730
Medicago truncatula
MTR_4g064730
I
0.741
OBART01G45440
Oryza barthii
OBART01G45440
I
0.741
OGLUM01G49830
Oryza glumaepatula
OGLUM01G49830
I
0.741
OLONG_010516
Oryza longistaminata
OLONG_010516
I
0.741
OMERI01G42240
Oryza meridionalis
OMERI01G42240
I
0.741
ONIVA01G51730
Oryza nivara
ONIVA01G51730
I
0.741
OPUNC01G44410
Oryza punctata
OPUNC01G44410
I
0.741
ORGLA01G0392100
Oryza glaberrima
ORGLA01G0392100
I
0.741
ORUFI01G48960
Oryza rufipogon
ORUFI01G48960
I
0.741
PCL1
Oryza sativa
OS01G0971800
I
0.741
PGSC0003DMG400002144
Solanum tuberosum
PGSC0003DMG400002144
I
0.741
POPTR_0009s03990
Populus trichocarpa
POPTR_0009s03990
I
0.741
PRUPE_ppa008837mg
Prunus persica
PRUPE_ppa008837mg
I
0.741
Sb03g047330
Sorghum bicolor
Sb03g047330
I
0.741
Si002653m.g
Setaria italica
Si002653m.g
I
0.741
Solyc06g005680.2
Solanum lycopersicum
Solyc06g005680.2
I
0.741
TCM_041791
Theobroma cacao
TCM_041791
I
0.741
TRAES3BF076800040CFD_g
Triticum aestivum
TRAES3BF076800040CFD_g
I
0.741
VIT_06s0004g05120
Vitis vinifera
VIT_06s0004g05120
I
0.741
Ca_16282
Cicer arietinum
Ca_16282
I
0.741
Cla008353
Citrullus lanatus
Cla008353
I
0.741
Pm000693
Prunus mume
Pm000693
I
0.741
Cucsa.117700
Cucumis sativus
Cucsa.117700
I
0.741
mgf008790m
Mimulus guttatus
mgf008790m
I
0.741
Aquca_003_00124
Aquilegia coerulea
Aquca_003_00124
I
0.741
Bostr.18473s0293
Boechera stricta
Bostr.18473s0293
I
0.741
Cagra.0448s0013
Capsella grandiflora
Cagra.0448s0013
I
0.741
Carubv10017603m.g
Capsella rubella
Carubv10017603m.g
I
0.741
Ciclev10028658m.g
Citrus clementina
Ciclev10028658m.g
I
0.741
Eucgr.B02313
Eucalyptus grandis
Eucgr.B02313
I
0.741
evm.TU.supercontig_81.106
Carica papaya
evm.TU.supercontig_81.106
I
0.741
gene30204-v1.0-hybrid
Fragaria vesca
gene30204-v1.0-hybrid
I
0.741
Gorai.001G112200
Gossypium raimondii
Gorai.001G112200
I
0.741
Gorai.003G129100
Gossypium raimondii
Gorai.003G129100
I
0.741
Gorai.009G097100
Gossypium raimondii
Gorai.009G097100
I
0.741
MDP0000672486
Malus domestica
MDP0000672486
I
0.741
orange1.1g047187m.g
Citrus sinensis
orange1.1g047187m.g
I
0.741
Pavir.Ba03246
Panicum virgatum
Pavir.Ba03246
I
0.741
Pavir.Ea04181
Panicum virgatum
Pavir.Ea04181
I
0.741
Pavir.Eb04079
Panicum virgatum
Pavir.Eb04079
I
0.741
SapurV1A.0128s0090
Salix purpurea
SapurV1A.0128s0090
I
0.741
Thhalv10002605m.g
Eutrema salsugineum
Thhalv10002605m.g
I
0.741
PK05290.1
Cannabis sativa
PK05290.1
I
0.741
Sb09g020340
Sorghum bicolor
Sb09g020340
I
0.740
Cagra.1317s0057
Capsella grandiflora
Cagra.1317s0057
I
0.739
Carubv10026895m.g
Capsella rubella
Carubv10026895m.g
I
0.739
est_orfs.10_1861_4270447:1
Micromonas pusilla
est_orfs.10_1861_4270447:1
I
0.737
GSMUA_AchrUn_randomG18750_001
Musa acuminata
GSMUA_AchrUn_randomG18750_001
I
0.735
PGSC0003DMG400030328
Solanum tuberosum
PGSC0003DMG400030328
I
0.735
Solyc06g076350.2
Solanum lycopersicum
Solyc06g076350.2
I
0.735
GSMUA_Achr10G12590_001
Musa acuminata
GSMUA_Achr10G12590_001
I
0.729
TCM_045790
Theobroma cacao
TCM_045790
I
0.726
Aquca_009_00923
Aquilegia coerulea
Aquca_009_00923
I
0.726
POPTR_0001s25040
Populus trichocarpa
POPTR_0001s25040
I
0.723
MDP0000669078
Malus domestica
MDP0000669078
I
0.723
SapurV1A.0041s0350
Salix purpurea
SapurV1A.0041s0350
I
0.723
Bra029866
Brassica rapa
Bra029866
I
0.722
gw1.15.242.1
Coccomyxa subellipsoidea C169
gw1.15.242.1
I
0.719
fgeneshCV_pg.C_scaffold_15000185
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_15000185
I
0.719
Bostr.26833s0280
Boechera stricta
Bostr.26833s0280
I
0.707
cassava35050.m1
Manihot esculenta
cassava35050.m1
N
0.689
cassava37074.valid.m1
Manihot esculenta
cassava37074.valid.m1
I
0.685
cassava37075.valid.m1
Manihot esculenta
cassava37075.valid.m1
I
0.685
Ciclev10004989m.g
Citrus clementina
Ciclev10004989m.g
I
0.685
Gorai.001G030600
Gossypium raimondii
Gorai.001G030600
I
0.685
GRMZM2G471600
Zea mays
GRMZM2G471600
I
0.684
PGSC0003DMG400028100
Solanum tuberosum
PGSC0003DMG400028100
I
0.684
Solyc10g080960.1
Solanum lycopersicum
Solyc10g080960.1
I
0.684
29751.m001898
Ricinus communis
29751.m001898
I
0.681
cassava19434.valid.m1
Manihot esculenta
cassava19434.valid.m1
I
0.681
cassava34353.m1
Manihot esculenta
cassava34353.m1
I
0.681
Lus10040780.g
Linum usitatissimum
Lus10040780.g
I
0.681
IGS.gm_5_00099
Chlorella NC64A
IGS.gm_5_00099
N
0.679
RR21
Oryza indica
BGIOSGA012149
I
0.678
BRADI1G69480
Brachypodium distachyon
BRADI1G69480
I
0.678
F775_32153
Aegilops tauschii
F775_32153
I
0.678
GRMZM2G099797
Zea mays
GRMZM2G099797
I
0.678
GRMZM2G126834
Zea mays
GRMZM2G126834
I
0.678
LPERR03G08040
Leersia perrieri
LPERR03G08040
I
0.678
OB03G19140
Oryza brachyantha
OB03G19140
I
0.678
OBART03G08950
Oryza barthii
OBART03G08950
I
0.678
OGLUM03G09080
Oryza glumaepatula
OGLUM03G09080
I
0.678
OLONG_002370
Oryza longistaminata
OLONG_002370
I
0.678
OMERI03G08390
Oryza meridionalis
OMERI03G08390
I
0.678
ONIVA06G01160
Oryza nivara
ONIVA06G01160
I
0.678
OPUNC03G08640
Oryza punctata
OPUNC03G08640
I
0.678
ORGLA03G0086800
Oryza glaberrima
ORGLA03G0086800
I
0.678
ORUFI03G09090
Oryza rufipogon
ORUFI03G09090
I
0.678
RR21
Oryza sativa
OS03G0224200
I
0.678
POPTR_0008s13490
Populus trichocarpa
POPTR_0008s13490
I
0.678
Sb01g042400
Sorghum bicolor
Sb01g042400
I
0.678
Si034517m.g
Setaria italica
Si034517m.g
I
0.678
Traes_4AS_6486B493A
Triticum aestivum
Traes_4AS_6486B493A
I
0.678
Traes_4BL_941E7DE4D
Triticum aestivum
Traes_4BL_941E7DE4D
I
0.678
Traes_4DL_2527CA8BF
Triticum aestivum
Traes_4DL_2527CA8BF
I
0.678
TRIUR3_25342
Triticum urartu
TRIUR3_25342
I
0.678
Pavir.Ia04946
Panicum virgatum
Pavir.Ia04946
I
0.678
Pavir.Ib00921
Panicum virgatum
Pavir.Ib00921
I
0.678
SapurV1A.0015s0530
Salix purpurea
SapurV1A.0015s0530
I
0.678
Thhalv10004402m.g
Eutrema salsugineum
Thhalv10004402m.g
I
0.677
BRADI1G47400
Brachypodium distachyon
BRADI1G47400
I
0.674
BRADI3G54120
Brachypodium distachyon
BRADI3G54120
I
0.674
MLOC_76165
Hordeum vulgare
MLOC_76165
I
0.674
Traes_6BL_790C095EE
Triticum aestivum
Traes_6BL_790C095EE
I
0.674
Traes_6DL_D1C9CE275
Triticum aestivum
Traes_6DL_D1C9CE275
I
0.674
Ca_09080
Cicer arietinum
Ca_09080
I
0.674
Lus10005340.g
Linum usitatissimum
Lus10005340.g
I
0.674
Lus10041020.g
Linum usitatissimum
Lus10041020.g
I
0.674
PK02601.1
Cannabis sativa
PK02601.1
I
0.674
GLYMA05G34523
Glycine max
GLYMA05G34523
N
0.669
Bo7g104190
Brassica oleracea
Bo7g104190
I
0.667
Bra012743
Brassica rapa
Bra012743
I
0.667
30147.m014309
Ricinus communis
30147.m014309
N
0.667
Ciclev10006586m.g
Citrus clementina
Ciclev10006586m.g
N
0.667
orange1.1g040406m.g
Citrus sinensis
orange1.1g040406m.g
N
0.667
Cagra.0995s0002
Capsella grandiflora
Cagra.0995s0002
I
0.662
Carubv10024931m.g
Capsella rubella
Carubv10024931m.g
I
0.662