CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J31180
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J31180
T289449_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.690
0.828
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.669
0.710
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J31180.1.p
Myb
19
66
RGAWTPEEDELLARAVAREGEGQWRTLPRRAGLLRCGKSCRLRWMNYL
Pavir.J31180.1.p
Myb
72
117
RGPIAADEEDLIVRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
258 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si004316m.g
Setaria italica
Si004316m.g
I
0.861
GRMZM2G395672
Zea mays
GRMZM2G395672
I
0.818
SapurV1A.0035s0030
Salix purpurea
SapurV1A.0035s0030
I
0.769
VIT_08s0007g07230
Vitis vinifera
VIT_08s0007g07230
I
0.767
orange1.1g036215m.g
Citrus sinensis
orange1.1g036215m.g
I
0.762
TCM_024180
Theobroma cacao
TCM_024180
I
0.756
TCM_025910
Theobroma cacao
TCM_025910
I
0.756
Eucgr.B03606
Eucalyptus grandis
Eucgr.B03606
I
0.756
BRADI2G47367
Brachypodium distachyon
BRADI2G47367
I
0.754
GLYMA19G44660
Glycine max
GLYMA19G44660
I
0.748
Ca_17627
Cicer arietinum
Ca_17627
I
0.748
Gorai.003G021100
Gossypium raimondii
Gorai.003G021100
I
0.747
Ca_01329
Cicer arietinum
Ca_01329
I
0.745
GSMUA_Achr10G14030_001
Musa acuminata
GSMUA_Achr10G14030_001
I
0.742
mgf006108m
Mimulus guttatus
mgf006108m
I
0.742
mgf015598m
Mimulus guttatus
mgf015598m
I
0.742
GSMUA_Achr5G06530_001
Musa acuminata
GSMUA_Achr5G06530_001
I
0.741
MDP0000157940
Malus domestica
MDP0000157940
I
0.741
LjSGA_023691.1
Lotus japonicus
LjSGA_023691.1
I
0.741
PK23594.1
Cannabis sativa
PK23594.1
I
0.740
Eucgr.C03151
Eucalyptus grandis
Eucgr.C03151
I
0.739
Eucgr.A02110
Eucalyptus grandis
Eucgr.A02110
I
0.737
chr1.CM0105.50.nd
Lotus japonicus
chr1.CM0105.50.nd
I
0.736
MTR_8g027345
Medicago truncatula
MTR_8g027345
I
0.734
MLOC_16037
Hordeum vulgare
MLOC_16037
I
0.733
Gorai.007G260600
Gossypium raimondii
Gorai.007G260600
I
0.732
GSMUA_Achr6G14840_001
Musa acuminata
GSMUA_Achr6G14840_001
I
0.730
TRAES3BF026500080CFD_g
Triticum aestivum
TRAES3BF026500080CFD_g
I
0.730
MTR_7g117730
Medicago truncatula
MTR_7g117730
I
0.728
AMTR_s00068p00092800
Amborella trichopoda
AMTR_s00068p00092800
I
0.727
AMTR_s00068p00097220
Amborella trichopoda
AMTR_s00068p00097220
I
0.727
cassava9274.m1
Manihot esculenta
cassava9274.m1
I
0.726
Ciclev10015648m.g
Citrus clementina
Ciclev10015648m.g
I
0.726
MDP0000655330
Malus domestica
MDP0000655330
I
0.726
MDP0000723614
Malus domestica
MDP0000723614
I
0.726
orange1.1g040726m.g
Citrus sinensis
orange1.1g040726m.g
I
0.726
SapurV1A.1276s0050
Salix purpurea
SapurV1A.1276s0050
I
0.726
PDK_20s1310471g002
Phoenix dactylifera
PDK_20s1310471g002
I
0.726
GSMUA_Achr7G13700_001
Musa acuminata
GSMUA_Achr7G13700_001
I
0.723
PGSC0003DMG400005848
Solanum tuberosum
PGSC0003DMG400005848
I
0.723
PRUPE_ppa006730mg
Prunus persica
PRUPE_ppa006730mg
I
0.723
cassava34176.m1
Manihot esculenta
cassava34176.m1
I
0.723
cassava6348.valid.m1
Manihot esculenta
cassava6348.valid.m1
I
0.723
evm.TU.supercontig_51.138
Carica papaya
evm.TU.supercontig_51.138
I
0.723
Gorai.007G350500
Gossypium raimondii
Gorai.007G350500
I
0.723
PGSC0003DMG400012126
Solanum tuberosum
PGSC0003DMG400012126
I
0.722
Solyc08g082890.2
Solanum lycopersicum
Solyc08g082890.2
I
0.722
LPERR01G23630
Leersia perrieri
LPERR01G23630
I
0.720
Solyc08g008480.2
Solanum lycopersicum
Solyc08g008480.2
I
0.720
GLYMA07G05960
Glycine max
GLYMA07G05960
I
0.719
GLYMA16G02570
Glycine max
GLYMA16G02570
I
0.719
Solyc01g005660.1
Solanum lycopersicum
Solyc01g005660.1
I
0.719
mgf001865m
Mimulus guttatus
mgf001865m
I
0.718
AMTR_s00068p00099460
Amborella trichopoda
AMTR_s00068p00099460
I
0.717
BGIOSGA004260
Oryza indica
BGIOSGA004260
I
0.717
OLONG_002608
Oryza longistaminata
OLONG_002608
I
0.717
ORGLA01G0227100
Oryza glaberrima
ORGLA01G0227100
I
0.717
ORUFI01G30610
Oryza rufipogon
ORUFI01G30610
I
0.717
OS01G0695900
Oryza sativa
OS01G0695900
I
0.717
POPTR_0003s21120
Populus trichocarpa
POPTR_0003s21120
I
0.717
POPTR_0013s05300
Populus trichocarpa
POPTR_0013s05300
I
0.717
evm.TU.supercontig_119.55
Carica papaya
evm.TU.supercontig_119.55
I
0.717
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.717
MDP0000791870
Malus domestica
MDP0000791870
I
0.717
SapurV1A.0081s0400
Salix purpurea
SapurV1A.0081s0400
I
0.717
SapurV1A.0553s0100
Salix purpurea
SapurV1A.0553s0100
I
0.717
SapurV1A.0553s0110
Salix purpurea
SapurV1A.0553s0110
I
0.717
POPTR_0001s04240
Populus trichocarpa
POPTR_0001s04240
I
0.714
PRUPE_ppa009439mg
Prunus persica
PRUPE_ppa009439mg
I
0.713
Pm018338
Prunus mume
Pm018338
I
0.713
POPTR_0019s05210
Populus trichocarpa
POPTR_0019s05210
I
0.712
Cucsa.304110
Cucumis sativus
Cucsa.304110
I
0.712
Ciclev10021571m.g
Citrus clementina
Ciclev10021571m.g
I
0.710
Eucgr.D02390
Eucalyptus grandis
Eucgr.D02390
I
0.710
evm.TU.supercontig_96.57
Carica papaya
evm.TU.supercontig_96.57
I
0.710
gene18691-v1.0-hybrid
Fragaria vesca
gene18691-v1.0-hybrid
I
0.710
Gorai.008G126700
Gossypium raimondii
Gorai.008G126700
I
0.710
MDP0000915330
Malus domestica
MDP0000915330
I
0.710
orange1.1g040841m.g
Citrus sinensis
orange1.1g040841m.g
I
0.710
PK14784.1
Cannabis sativa
PK14784.1
I
0.710
mgf025197m
Mimulus guttatus
mgf025197m
I
0.708
SapurV1A.0918s0130
Salix purpurea
SapurV1A.0918s0130
I
0.708
Eucgr.K01504
Eucalyptus grandis
Eucgr.K01504
I
0.707
GSMUA_Achr2G19380_001
Musa acuminata
GSMUA_Achr2G19380_001
I
0.706
POPTR_0001s11100
Populus trichocarpa
POPTR_0001s11100
I
0.706
POPTR_0003s14420
Populus trichocarpa
POPTR_0003s14420
I
0.706
30068.m002544
Ricinus communis
30068.m002544
I
0.706
SapurV1A.0059s0150
Salix purpurea
SapurV1A.0059s0150
I
0.706
Eucgr.D01701
Eucalyptus grandis
Eucgr.D01701
I
0.705
Lus10013762.g
Linum usitatissimum
Lus10013762.g
I
0.703
GLYMA13G09980
Glycine max
GLYMA13G09980
I
0.702
GLYMA14G24500
Glycine max
GLYMA14G24500
I
0.702
POPTR_0013s05310
Populus trichocarpa
POPTR_0013s05310
I
0.702
Aquca_009_00496
Aquilegia coerulea
Aquca_009_00496
I
0.702
SapurV1A.1276s0060
Salix purpurea
SapurV1A.1276s0060
I
0.702
TCM_029121
Theobroma cacao
TCM_029121
I
0.701
SapurV1A.0598s0010
Salix purpurea
SapurV1A.0598s0010
I
0.701
LjT20L14.140.nd
Lotus japonicus
LjT20L14.140.nd
I
0.700
GRMZM2G419239
Zea mays
GRMZM2G419239
I
0.695
VIT_06s0004g00570
Vitis vinifera
VIT_06s0004g00570
I
0.695
POPTR_0003s14430
Populus trichocarpa
POPTR_0003s14430
I
0.694
SapurV1A.0059s0160
Salix purpurea
SapurV1A.0059s0160
I
0.694
GRMZM2G701063
Zea mays
GRMZM2G701063
I
0.693
VIT_15s0046g00170
Vitis vinifera
VIT_15s0046g00170
I
0.693
Gorai.004G151000
Gossypium raimondii
Gorai.004G151000
I
0.693
Gorai.004G044000
Gossypium raimondii
Gorai.004G044000
I
0.692
TCM_015685
Theobroma cacao
TCM_015685
I
0.691
SELMODRAFT_127220
Selaginella moellendorffii
SELMODRAFT_127220
I
0.690
SELMODRAFT_98669
Selaginella moellendorffii
SELMODRAFT_98669
I
0.690
Q2TCH0_PETHY
Petunia x hybrida
Q2TCH0_PETHY
D
0.690
cassava36364.valid.m1
Manihot esculenta
cassava36364.valid.m1
I
0.690
Gorai.004G130900
Gossypium raimondii
Gorai.004G130900
I
0.690
Lus10039173.g
Linum usitatissimum
Lus10039173.g
I
0.690
POPTR_0014s09630
Populus trichocarpa
POPTR_0014s09630
I
0.689
TCM_037377
Theobroma cacao
TCM_037377
I
0.689
cassava29820.valid.m1
Manihot esculenta
cassava29820.valid.m1
I
0.689
Pavir.Db02046
Panicum virgatum
Pavir.Db02046
I
0.689
SapurV1A.0013s0160
Salix purpurea
SapurV1A.0013s0160
I
0.689
AMTR_s00024p00250970
Amborella trichopoda
AMTR_s00024p00250970
I
0.688
Cla011528
Citrullus lanatus
Cla011528
I
0.688
AMTR_s00030p00146410
Amborella trichopoda
AMTR_s00030p00146410
I
0.687
AMTR_s00068p00118480
Amborella trichopoda
AMTR_s00068p00118480
I
0.686
F775_19148
Aegilops tauschii
F775_19148
I
0.686
GSMUA_Achr3G21000_001
Musa acuminata
GSMUA_Achr3G21000_001
I
0.686
Traes_4DL_26A958CDD
Triticum aestivum
Traes_4DL_26A958CDD
I
0.686
Eucgr.C00722
Eucalyptus grandis
Eucgr.C00722
I
0.685
PRUPE_ppa023789mg
Prunus persica
PRUPE_ppa023789mg
I
0.684
F775_14392
Aegilops tauschii
F775_14392
I
0.683
Traes_6AS_5562B97F7
Triticum aestivum
Traes_6AS_5562B97F7
I
0.683
Traes_6DS_A0EC5D808
Triticum aestivum
Traes_6DS_A0EC5D808
I
0.683
TRIUR3_22706
Triticum urartu
TRIUR3_22706
I
0.683
Aquca_009_00493
Aquilegia coerulea
Aquca_009_00493
I
0.683
MYB5
Arabidopsis thaliana
AT3G13540
I
0.682
Bra039395
Brassica rapa
Bra039395
I
0.682
MTR_3g083540
Medicago truncatula
MTR_3g083540
I
0.682
OB06G16110
Oryza brachyantha
OB06G16110
I
0.682
ORGLA06G0059500
Oryza glaberrima
ORGLA06G0059500
I
0.682
ORUFI06G06900
Oryza rufipogon
ORUFI06G06900
I
0.682
POPTR_0002s17460
Populus trichocarpa
POPTR_0002s17460
I
0.682
ATMYB5
Arabidopsis lyrata
scaffold_301556.1
I
0.682
Bostr.3640s0147
Boechera stricta
Bostr.3640s0147
I
0.682
SapurV1A.0003s0900
Salix purpurea
SapurV1A.0003s0900
I
0.682
Thhalv10022057m.g
Eutrema salsugineum
Thhalv10022057m.g
I
0.682
PK13689.1
Cannabis sativa
PK13689.1
I
0.682
Eucgr.E01031
Eucalyptus grandis
Eucgr.E01031
I
0.681
SapurV1A.0035s0040
Salix purpurea
SapurV1A.0035s0040
I
0.681
F775_42516
Aegilops tauschii
F775_42516
I
0.680
GRMZM2G084583
Zea mays
GRMZM2G084583
I
0.680
TCM_037555
Theobroma cacao
TCM_037555
I
0.680
Gorai.010G087200
Gossypium raimondii
Gorai.010G087200
I
0.680
PRUPE_ppa018430mg
Prunus persica
PRUPE_ppa018430mg
I
0.679
Pm024189
Prunus mume
Pm024189
I
0.679
PRUPE_ppa010846mg
Prunus persica
PRUPE_ppa010846mg
I
0.678
GLYMA10G35050
Glycine max
GLYMA10G35050
I
0.677
cassava36365.valid.m1
Manihot esculenta
cassava36365.valid.m1
I
0.677
Bo1g138250
Brassica oleracea
Bo1g138250
I
0.676
Solyc05g008250.1
Solanum lycopersicum
Solyc05g008250.1
I
0.676
gene08694-v1.0-hybrid
Fragaria vesca
gene08694-v1.0-hybrid
I
0.676
TRIUR3_09734
Triticum urartu
TRIUR3_09734
I
0.675
Pm029185
Prunus mume
Pm029185
I
0.675
28226.m000839
Ricinus communis
28226.m000839
I
0.675
SapurV1A.0120s0010
Salix purpurea
SapurV1A.0120s0010
I
0.675
PK11717.1
Cannabis sativa
PK11717.1
I
0.675
Traes_4DL_8A9D9ACCB
Triticum aestivum
Traes_4DL_8A9D9ACCB
I
0.674
cassava28702.m1
Manihot esculenta
cassava28702.m1
I
0.674
AMTR_s00005p00268890
Amborella trichopoda
AMTR_s00005p00268890
I
0.673
TCM_010839
Theobroma cacao
TCM_010839
I
0.673
Gorai.005G162600
Gossypium raimondii
Gorai.005G162600
I
0.673
F775_17212
Aegilops tauschii
F775_17212
I
0.672
GSMUA_Achr3G07940_001
Musa acuminata
GSMUA_Achr3G07940_001
I
0.672
MTR_4g125520
Medicago truncatula
MTR_4g125520
I
0.672
PGSC0003DMG400030548
Solanum tuberosum
PGSC0003DMG400030548
I
0.672
Bostr.12659s0116
Boechera stricta
Bostr.12659s0116
I
0.672
Gorai.001G020400
Gossypium raimondii
Gorai.001G020400
I
0.672
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.672
cassava25868.m1
Manihot esculenta
cassava25868.m1
I
0.671
Cagra.0690s0007
Capsella grandiflora
Cagra.0690s0007
I
0.671
Carubv10014443m.g
Capsella rubella
Carubv10014443m.g
I
0.671
evm.TU.supercontig_28.71
Carica papaya
evm.TU.supercontig_28.71
I
0.671
gene25098-v1.0-hybrid
Fragaria vesca
gene25098-v1.0-hybrid
I
0.671
MDP0000196982
Malus domestica
MDP0000196982
I
0.671
MDP0000209761
Malus domestica
MDP0000209761
I
0.671
MDP0000211677
Malus domestica
MDP0000211677
I
0.671
GSMUA_Achr10G16010_001
Musa acuminata
GSMUA_Achr10G16010_001
I
0.670
Sb10g006700
Sorghum bicolor
Sb10g006700
I
0.670
TCM_000535
Theobroma cacao
TCM_000535
I
0.670
Eucgr.I00012
Eucalyptus grandis
Eucgr.I00012
I
0.670
MYB3
Arabidopsis thaliana
AT1G22640
D
0.669
Bo7g057770
Brassica oleracea
Bo7g057770
I
0.669
Bo8g071580
Brassica oleracea
Bo8g071580
I
0.669
Bra012337
Brassica rapa
Bra012337
I
0.669
ATMYB3
Arabidopsis lyrata
fgenesh2_kg.1__2457__AT1G22640.1
I
0.669
OB03G30160
Oryza brachyantha
OB03G30160
I
0.669
ORGLA03G0196700
Oryza glaberrima
ORGLA03G0196700
I
0.669
Cagra.0114s0040
Capsella grandiflora
Cagra.0114s0040
I
0.669
Carubv10009761m.g
Capsella rubella
Carubv10009761m.g
I
0.669
SapurV1A.0710s0050
Salix purpurea
SapurV1A.0710s0050
I
0.669
Thhalv10008456m.g
Eutrema salsugineum
Thhalv10008456m.g
I
0.669
Eucgr.B00866
Eucalyptus grandis
Eucgr.B00866
I
0.668
MDP0000167107
Malus domestica
MDP0000167107
I
0.668
POPTR_0019s05190
Populus trichocarpa
POPTR_0019s05190
I
0.667
POPTR_0019s05200
Populus trichocarpa
POPTR_0019s05200
I
0.667
VIT_17s0000g02650
Vitis vinifera
VIT_17s0000g02650
I
0.667
MDP0000250597
Malus domestica
MDP0000250597
I
0.667
BGIOSGA026525
Oryza indica
BGIOSGA026525
I
0.666
BGIOSGA026527
Oryza indica
BGIOSGA026527
I
0.666
OB08G29560
Oryza brachyantha
OB08G29560
I
0.666
ORGLA08G0216900
Oryza glaberrima
ORGLA08G0216900
I
0.666
ORUFI08G25300
Oryza rufipogon
ORUFI08G25300
I
0.666
POPTR_0006s23840
Populus trichocarpa
POPTR_0006s23840
I
0.666
PRUPE_ppa022205mg
Prunus persica
PRUPE_ppa022205mg
I
0.666
TCM_037559
Theobroma cacao
TCM_037559
I
0.666
VIT_11s0016g01300
Vitis vinifera
VIT_11s0016g01300
I
0.666
Pm005570
Prunus mume
Pm005570
I
0.666
Gorai.002G180300
Gossypium raimondii
Gorai.002G180300
I
0.666
MDP0000031172
Malus domestica
MDP0000031172
I
0.666
MDP0000210851
Malus domestica
MDP0000210851
I
0.666
SapurV1A.0263s0400
Salix purpurea
SapurV1A.0263s0400
I
0.666
SapurV1A.0710s0070
Salix purpurea
SapurV1A.0710s0070
I
0.666
Bra027423
Brassica rapa
Bra027423
I
0.665
GSMUA_Achr8G32480_001
Musa acuminata
GSMUA_Achr8G32480_001
I
0.665
TCM_000174
Theobroma cacao
TCM_000174
I
0.665
TCM_005112
Theobroma cacao
TCM_005112
I
0.665
TCM_037379
Theobroma cacao
TCM_037379
I
0.665
cassava27189.m1
Manihot esculenta
cassava27189.m1
I
0.665
PDK_20s1716541g001
Phoenix dactylifera
PDK_20s1716541g001
I
0.665
POPTR_0010s12420
Populus trichocarpa
POPTR_0010s12420
I
0.664
VIT_01s0011g04760
Vitis vinifera
VIT_01s0011g04760
I
0.664
Pm005571
Prunus mume
Pm005571
I
0.664
cassava29110.valid.m1
Manihot esculenta
cassava29110.valid.m1
I
0.664
Eucgr.B02896
Eucalyptus grandis
Eucgr.B02896
I
0.664
Eucgr.G02195
Eucalyptus grandis
Eucgr.G02195
I
0.664
SapurV1A.0163s0150
Salix purpurea
SapurV1A.0163s0150
I
0.664
AMTR_s00024p00224180
Amborella trichopoda
AMTR_s00024p00224180
I
0.663
GLYMA13G16890
Glycine max
GLYMA13G16890
I
0.663
GLYMA17G05831
Glycine max
GLYMA17G05831
I
0.663
GSMUA_Achr3G07950_001
Musa acuminata
GSMUA_Achr3G07950_001
I
0.663
GSMUA_Achr6G04400_001
Musa acuminata
GSMUA_Achr6G04400_001
I
0.663
GSMUA_Achr8G22690_001
Musa acuminata
GSMUA_Achr8G22690_001
I
0.663
POPTR_0006s29080
Populus trichocarpa
POPTR_0006s29080
I
0.663
POPTR_0018s05530
Populus trichocarpa
POPTR_0018s05530
I
0.663
POPTR_0018s05750
Populus trichocarpa
POPTR_0018s05750
I
0.663
TCM_004509
Theobroma cacao
TCM_004509
I
0.663
TCM_037376
Theobroma cacao
TCM_037376
I
0.663
VIT_04s0008g01800
Vitis vinifera
VIT_04s0008g01800
I
0.663
Ca_03154
Cicer arietinum
Ca_03154
I
0.663
cassava7672.valid.m1
Manihot esculenta
cassava7672.valid.m1
I
0.663
Eucgr.C00721
Eucalyptus grandis
Eucgr.C00721
I
0.663
gene15392-v1.0-hybrid
Fragaria vesca
gene15392-v1.0-hybrid
I
0.663
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.662
Bra036145
Brassica rapa
Bra036145
I
0.661
GSMUA_Achr2G20600_001
Musa acuminata
GSMUA_Achr2G20600_001
I
0.661
Sb01g032770
Sorghum bicolor
Sb01g032770
I
0.661
Si038905m.g
Setaria italica
Si038905m.g
I
0.661
TCM_010778
Theobroma cacao
TCM_010778
I
0.661
Eucgr.C03554
Eucalyptus grandis
Eucgr.C03554
I
0.661
Thhalv10004518m.g
Eutrema salsugineum
Thhalv10004518m.g
I
0.661
PDK_20s1918041g001
Phoenix dactylifera
PDK_20s1918041g001
I
0.661