CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J35399
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J35399
T289462_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J35399.1.p
Myb
31
78
KGPWMAEEDAVLLEHVRAHGPCDWSSIRSKGLLPRTGKSCRLRWVNKL
Pavir.J35399.1.p
Myb
85
129
GCKFSAEEERVVLELQAQFGNKWARIATYLPGRTDNDVKNFWSTR
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
88 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J30013
Panicum virgatum
Pavir.J30013
N
0.909
Si012032m.g
Setaria italica
Si012032m.g
N
0.901
Pavir.Gb01130
Panicum virgatum
Pavir.Gb01130
N
0.901
OB04G27810
Oryza brachyantha
OB04G27810
N
0.870
GRMZM2G105137
Zea mays
GRMZM2G105137
N
0.847
Traes_2AL_0A21FB42C
Triticum aestivum
Traes_2AL_0A21FB42C
N
0.843
Traes_2BL_855A1170C
Triticum aestivum
Traes_2BL_855A1170C
N
0.843
Pavir.Fb01900
Panicum virgatum
Pavir.Fb01900
N
0.842
BGIOSGA016880
Oryza indica
BGIOSGA016880
N
0.840
OBART04G20790
Oryza barthii
OBART04G20790
N
0.840
OGLUM04G20730
Oryza glumaepatula
OGLUM04G20730
N
0.840
OMERI04G17240
Oryza meridionalis
OMERI04G17240
N
0.840
ONIVA04G19030
Oryza nivara
ONIVA04G19030
N
0.840
OPUNC04G18480
Oryza punctata
OPUNC04G18480
N
0.840
ORGLA04G0178400
Oryza glaberrima
ORGLA04G0178400
N
0.840
ORUFI04G22380
Oryza rufipogon
ORUFI04G22380
N
0.840
TCM_005653
Theobroma cacao
TCM_005653
N
0.838
evm.TU.supercontig_37.96
Carica papaya
evm.TU.supercontig_37.96
N
0.838
Sb06g024510
Sorghum bicolor
Sb06g024510
N
0.828
MDP0000237596
Malus domestica
MDP0000237596
N
0.824
MDP0000319634
Malus domestica
MDP0000319634
N
0.824
BRADI5G17600
Brachypodium distachyon
BRADI5G17600
N
0.823
PRUPE_ppa016603mg
Prunus persica
PRUPE_ppa016603mg
N
0.822
Pm019530
Prunus mume
Pm019530
N
0.822
Pm031387
Prunus mume
Pm031387
N
0.822
Pm017596
Prunus mume
Pm017596
N
0.821
30174.m008784
Ricinus communis
30174.m008784
N
0.821
LjT36B17.50.nd
Lotus japonicus
LjT36B17.50.nd
N
0.820
GRMZM2G311059
Zea mays
GRMZM2G311059
N
0.818
Eucgr.E01581
Eucalyptus grandis
Eucgr.E01581
N
0.818
Si015815m.g
Setaria italica
Si015815m.g
N
0.814
POPTR_0002s14180
Populus trichocarpa
POPTR_0002s14180
N
0.808
Traes_2DL_912473A86
Triticum aestivum
Traes_2DL_912473A86
N
0.808
Cagra.3527s0008
Capsella grandiflora
Cagra.3527s0008
N
0.808
Carubv10019483m.g
Capsella rubella
Carubv10019483m.g
N
0.808
Pavir.Fa00479
Panicum virgatum
Pavir.Fa00479
N
0.808
SapurV1A.0033s0200
Salix purpurea
SapurV1A.0033s0200
N
0.808
Cla006831
Citrullus lanatus
Cla006831
N
0.804
PRUPE_ppa020326mg
Prunus persica
PRUPE_ppa020326mg
N
0.799
GLYMA03G26830
Glycine max
GLYMA03G26830
N
0.796
DUO1
Vitis vinifera
VIT_15s0021g02040
N
0.796
mgf019330m
Mimulus guttatus
mgf019330m
N
0.796
Ciclev10021345m.g
Citrus clementina
Ciclev10021345m.g
N
0.796
orange1.1g038795m.g
Citrus sinensis
orange1.1g038795m.g
N
0.796
gene04800-v1.0-hybrid
Fragaria vesca
gene04800-v1.0-hybrid
N
0.795
gene12261-v1.0-hybrid
Fragaria vesca
gene12261-v1.0-hybrid
N
0.795
Bo8g095200
Brassica oleracea
Bo8g095200
N
0.794
Bra007536
Brassica rapa
Bra007536
N
0.794
Solyc01g090530.1
Solanum lycopersicum
Solyc01g090530.1
N
0.791
SapurV1A.0490s0170
Salix purpurea
SapurV1A.0490s0170
N
0.791
Cucsa.121070
Cucumis sativus
Cucsa.121070
N
0.790
Gorai.004G165400
Gossypium raimondii
Gorai.004G165400
N
0.790
Sb07g027160
Sorghum bicolor
Sb07g027160
N
0.789
GLYMA07G14480
Glycine max
GLYMA07G14480
N
0.787
DUO1
Arabidopsis thaliana
AT3G60460
N
0.783
Bra003413
Brassica rapa
Bra003413
N
0.783
DUO1
Arabidopsis lyrata
fgenesh2_kg.5__2511__AT3G60460.1
N
0.783
POPTR_0014s05370
Populus trichocarpa
POPTR_0014s05370
N
0.783
POPTR_0014s05420
Populus trichocarpa
POPTR_0014s05420
N
0.783
Bostr.13158s0042
Boechera stricta
Bostr.13158s0042
N
0.783
MTR_4g029540
Medicago truncatula
MTR_4g029540
N
0.782
PGSC0003DMG400025720
Solanum tuberosum
PGSC0003DMG400025720
N
0.779
MTR_8g006470
Medicago truncatula
MTR_8g006470
N
0.778
cassava17368.m1
Manihot esculenta
cassava17368.m1
N
0.776
cassava19913.m1
Manihot esculenta
cassava19913.m1
N
0.776
Bo6g077030
Brassica oleracea
Bo6g077030
N
0.774
Thhalv10006475m.g
Eutrema salsugineum
Thhalv10006475m.g
N
0.773
GRMZM2G046443
Zea mays
GRMZM2G046443
N
0.772
TCM_014872
Theobroma cacao
TCM_014872
N
0.761
Aquca_002_00029
Aquilegia coerulea
Aquca_002_00029
N
0.761
Cla010897
Citrullus lanatus
Cla010897
N
0.759
Solyc10g019260.1
Solanum lycopersicum
Solyc10g019260.1
N
0.744
Aquca_081_00025
Aquilegia coerulea
Aquca_081_00025
N
0.742
Cucsa.094180
Cucumis sativus
Cucsa.094180
N
0.734
Ca_19557
Cicer arietinum
Ca_19557
N
0.733
Ca_18954
Cicer arietinum
Ca_18954
N
0.728
GLYMA09G00371
Glycine max
GLYMA09G00371
N
0.727
AMTR_s00111p00072510
Amborella trichopoda
AMTR_s00111p00072510
N
0.725
GLYMA12G37026
Glycine max
GLYMA12G37026
N
0.721
GSMUA_Achr1G01660_001
Musa acuminata
GSMUA_Achr1G01660_001
N
0.721
Bostr.13158s0046
Boechera stricta
Bostr.13158s0046
N
0.715
Lus10009780.g
Linum usitatissimum
Lus10009780.g
N
0.699
OLONG_013759
Oryza longistaminata
OLONG_013759
N
0.686
mgf004314m
Mimulus guttatus
mgf004314m
N
0.686
SELMODRAFT_116971
Selaginella moellendorffii
SELMODRAFT_116971
N
0.678
SELMODRAFT_118852
Selaginella moellendorffii
SELMODRAFT_118852
N
0.678
Gorai.003G112700
Gossypium raimondii
Gorai.003G112700
N
0.677
LPERR04G16870
Leersia perrieri
LPERR04G16870
N
0.673