CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
chr3.LjT02L14.30.nd
(
Lotus japonicus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
chr3.LjT02L14.30.nd
T290704_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.804
0.766
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.734
0.766
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.734
0.766
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.718
0.787
estExt_fgenesh1_pg.C_Chr_13.00010057
M02366_2.00
Ostreococcus tauri
NRMCCTANN
NNTAGGKYN
PBM
Weirauch et al.(2014)
pTH9424
0.676
0.702
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.668
0.723
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.662
0.702
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.662
0.702
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.662
0.702
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.662
0.702
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr3.LjT02L14.30.nd
Myb
5
57
KQKWTAEEEDALHRGVQKYGAGKWKNILKDPEFAPSLTSRSNIDLKDKWRNLN
Links
Other
Myb/SANT
family TFs
Other
Lotus japonicus
TFs
223 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.909
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.901
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.901
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.851
Ca_02722
Cicer arietinum
Ca_02722
I
0.844
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.832
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.825
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.825
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.825
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.823
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.823
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.823
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.823
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.812
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.807
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.807
Si002467m.g
Setaria italica
Si002467m.g
I
0.807
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.807
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.807
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.807
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.804
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.804
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.804
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.804
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.804
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.804
Ca_02232
Cicer arietinum
Ca_02232
I
0.804
Ca_09355
Cicer arietinum
Ca_09355
I
0.804
Cla014248
Citrullus lanatus
Cla014248
I
0.804
Pm002374
Prunus mume
Pm002374
I
0.804
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.804
MDP0000239354
Malus domestica
MDP0000239354
I
0.804
PK06103.1
Cannabis sativa
PK06103.1
D
0.804
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.804
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.803
Pm021139
Prunus mume
Pm021139
I
0.803
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.799
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.799
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.799
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.797
Eucgr.H02312
Eucalyptus grandis
Eucgr.H02312
I
0.794
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.792
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.792
29812.m000204
Ricinus communis
29812.m000204
I
0.792
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.792
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.792
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.792
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.792
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.792
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.792
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.792
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.792
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.791
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.791
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.791
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.791
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.791
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.791
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.788
GRMZM2G023667
Zea mays
GRMZM2G023667
I
0.786
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.784
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.784
Thhalv10012087m.g
Eutrema salsugineum
Thhalv10012087m.g
I
0.782
Ca_10058
Cicer arietinum
Ca_10058
I
0.774
VIT_00s1311g00020
Vitis vinifera
VIT_00s1311g00020
I
0.770
VIT_07s0151g00480
Vitis vinifera
VIT_07s0151g00480
I
0.770
MDP0000234807
Malus domestica
MDP0000234807
I
0.770
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.767
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.767
AMTR_s00036p00166880
Amborella trichopoda
AMTR_s00036p00166880
I
0.766
MTR_1g041765
Medicago truncatula
MTR_1g041765
I
0.765
MTR_5g015340
Medicago truncatula
MTR_5g015340
I
0.765
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.765
gene05764-v1.0-hybrid
Fragaria vesca
gene05764-v1.0-hybrid
I
0.760
TCM_007242
Theobroma cacao
TCM_007242
I
0.758
TRB1
Vitis vinifera
VIT_03s0091g01030
I
0.758
Cla006547
Citrullus lanatus
Cla006547
I
0.758
29912.m005376
Ricinus communis
29912.m005376
I
0.758
Cucsa.298390
Cucumis sativus
Cucsa.298390
I
0.758
Ciclev10028926m.g
Citrus clementina
Ciclev10028926m.g
I
0.758
Gorai.005G230800
Gossypium raimondii
Gorai.005G230800
I
0.758
orange1.1g022048m.g
Citrus sinensis
orange1.1g022048m.g
I
0.758
PK19870.1
Cannabis sativa
PK19870.1
I
0.758
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.756
BGIOSGA035841
Oryza indica
BGIOSGA035841
I
0.751
OB12G25520
Oryza brachyantha
OB12G25520
I
0.751
OBART12G18680
Oryza barthii
OBART12G18680
I
0.751
OGLUM12G20330
Oryza glumaepatula
OGLUM12G20330
I
0.751
OLONG_008332
Oryza longistaminata
OLONG_008332
I
0.751
ONIVA12G17630
Oryza nivara
ONIVA12G17630
I
0.751
OPUNC12G16890
Oryza punctata
OPUNC12G16890
I
0.751
ORGLA12G0159400
Oryza glaberrima
ORGLA12G0159400
I
0.751
ORUFI12G20880
Oryza rufipogon
ORUFI12G20880
I
0.751
OS12G0613300
Oryza sativa
OS12G0613300
I
0.751
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.750
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.750
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.742
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.740
Bra025967
Brassica rapa
Bra025967
I
0.740
Bra030992
Brassica rapa
Bra030992
I
0.740
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.734
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.733
OMERI12G14000
Oryza meridionalis
OMERI12G14000
I
0.730
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.728
SELMODRAFT_413266
Selaginella moellendorffii
SELMODRAFT_413266
I
0.727
SELMODRAFT_426759
Selaginella moellendorffii
SELMODRAFT_426759
I
0.727
TCM_000807
Theobroma cacao
TCM_000807
I
0.726
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.726
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.726
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.726
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.726
Thhalv10011866m.g
Eutrema salsugineum
Thhalv10011866m.g
I
0.726
TCM_029078
Theobroma cacao
TCM_029078
I
0.725
29706.m001328
Ricinus communis
29706.m001328
I
0.725
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.725
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.725
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.724
Pm027209
Prunus mume
Pm027209
I
0.724
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.724
MDP0000265359
Malus domestica
MDP0000265359
I
0.724
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.722
Bra016598
Brassica rapa
Bra016598
I
0.722
GLYMA07G00930
Glycine max
GLYMA07G00930
I
0.720
GLYMA08G20270
Glycine max
GLYMA08G20270
I
0.720
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.718
OB01G37330
Oryza brachyantha
OB01G37330
I
0.718
OBART01G28260
Oryza barthii
OBART01G28260
I
0.718
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.718
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.718
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.718
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.718
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.718
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.718
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.718
OS01G0708000
Oryza sativa
OS01G0708000
D
0.718
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.717
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.717
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.716
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.716
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.716
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.716
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.716
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.716
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.716
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.716
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.715
Pm013309
Prunus mume
Pm013309
I
0.715
29661.m000926
Ricinus communis
29661.m000926
I
0.715
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.715
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.713
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.712
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.710
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.710
Aquca_060_00026
Aquilegia coerulea
Aquca_060_00026
I
0.709
Cla012798
Citrullus lanatus
Cla012798
I
0.708
Cucsa.341020
Cucumis sativus
Cucsa.341020
I
0.708
EuGene.0500010080
Micromonas sp RCC299
EuGene.0500010080
I
0.708
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.707
mgf007122m
Mimulus guttatus
mgf007122m
I
0.706
PK00568.1
Cannabis sativa
PK00568.1
I
0.705
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.700
Bra016037
Brassica rapa
Bra016037
I
0.700
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.700
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.700
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.700
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.694
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.688
PGSC0003DMG402003328
Solanum tuberosum
PGSC0003DMG402003328
I
0.687
Solyc02g064630.2
Solanum lycopersicum
Solyc02g064630.2
I
0.687
mgf000125m
Mimulus guttatus
mgf000125m
I
0.686
mgf010975m
Mimulus guttatus
mgf010975m
I
0.686
POPTR_0007s14920
Populus trichocarpa
POPTR_0007s14920
I
0.681
cassava37744.valid.m1
Manihot esculenta
cassava37744.valid.m1
I
0.681
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.680
Bra030894
Brassica rapa
Bra030894
I
0.680
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.680
MTR_2g031870
Medicago truncatula
MTR_2g031870
I
0.676
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.676
Ca_08043
Cicer arietinum
Ca_08043
I
0.676
estExt_fgenesh1_pg.C_Chr_13.00010057
Ostreococcus tauri
estExt_fgenesh1_pg.C_Chr_13.00010057
D
0.676
POPTR_0014s01010
Populus trichocarpa
POPTR_0014s01010
I
0.675
Lus10011546.g
Linum usitatissimum
Lus10011546.g
I
0.675
Lus10019260.g
Linum usitatissimum
Lus10019260.g
I
0.675
SapurV1A.0235s0100
Salix purpurea
SapurV1A.0235s0100
I
0.675
SapurV1A.1368s0050
Salix purpurea
SapurV1A.1368s0050
I
0.675
Bo1g081300
Brassica oleracea
Bo1g081300
I
0.672
Bra029978
Brassica rapa
Bra029978
I
0.672
TRB3
Arabidopsis lyrata
fgenesh2_kg.5__1337__AT3G49850.1
I
0.672
Bostr.0568s0184
Boechera stricta
Bostr.0568s0184
I
0.672
Bostr.6864s0256
Boechera stricta
Bostr.6864s0256
I
0.672
Cagra.0342s0046
Capsella grandiflora
Cagra.0342s0046
I
0.672
Cagra.4491s0006
Capsella grandiflora
Cagra.4491s0006
I
0.672
Carubv10017722m.g
Capsella rubella
Carubv10017722m.g
I
0.672
Carubv10026874m.g
Capsella rubella
Carubv10026874m.g
I
0.672
Thhalv10004691m.g
Eutrema salsugineum
Thhalv10004691m.g
I
0.672
Thhalv10010562m.g
Eutrema salsugineum
Thhalv10010562m.g
I
0.672
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.671
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.671
OBART01G21150
Oryza barthii
OBART01G21150
I
0.671
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.671
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.671
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.671
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.671
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.671
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.671
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.671
OS01G0589300
Oryza sativa
OS01G0589300
I
0.671
TRB1
Arabidopsis thaliana
AT1G49950
D
0.668
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.668
Bra018818
Brassica rapa
Bra018818
I
0.668
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.668
Aquca_004_00181
Aquilegia coerulea
Aquca_004_00181
I
0.668
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.668
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.668
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.668
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.668
mgf011386m
Mimulus guttatus
mgf011386m
I
0.666
MTR_0095s0040
Medicago truncatula
MTR_0095s0040
I
0.665
MTR_8g494240
Medicago truncatula
MTR_8g494240
I
0.665
mgf004823m
Mimulus guttatus
mgf004823m
I
0.665
TRB2
Arabidopsis thaliana
AT5G67580
D
0.662
TRB2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002157
I
0.662
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.661