LjSGA_102038.1 (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 LjSGA_102038.1 T291008_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYBP_MAIZE
M11057_2.00 		Zea mays
ACCWACCHN
NDGGTWGGT		 Transfac
Matys et al.(2006)
P$P_01 		0.717 0.764
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_102038.1 Myb 14 61
LjSGA_102038.1 Myb 67 96

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003258 Ricinus communis 29889.m003258 I 0.743
CM0385.290.nd Lotus japonicus CM0385.290.nd I 0.743
cassava34998.m1 Manihot esculenta cassava34998.m1 I 0.736
F775_20860 Aegilops tauschii F775_20860 I 0.727
30076.m004682 Ricinus communis 30076.m004682 I 0.727
evm.TU.supercontig_18.16 Carica papaya evm.TU.supercontig_18.16 I 0.719
GRMZM2G016020 Zea mays GRMZM2G016020 I 0.717
GRMZM2G129872 Zea mays GRMZM2G129872 I 0.717
MYBP_MAIZE Zea mays MYBP_MAIZE D 0.717
Pavir.Ia03542 Panicum virgatum Pavir.Ia03542 I 0.717
Cagra.0551s0003 Capsella grandiflora Cagra.0551s0003 I 0.682
Pavir.Ea01343 Panicum virgatum Pavir.Ea01343 I 0.677
BGIOSGA003347 Oryza indica BGIOSGA003347 I 0.670
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.670
OLONG_002280 Oryza longistaminata OLONG_002280 I 0.668