CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo00853s060
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo00853s060
T292281_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.986
0.826
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.946
0.730
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.946
0.730
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo00853s060.1
NAC/NAM
5
135
LVGYRFSPTGEELINHYLKNKILGKSWLVDHAISEVNICRYEPWFLPSLSKLESKDLVWYFFSPKEYTSAKKNVTKRTTPSGYWKATGVDRKIKDWRGNGVEIGIKKTLVYYEGRVPNGVWTPWVLHEYHI
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NAC68
Arabidopsis thaliana
AT4G01540
D
0.946
NAC69
Arabidopsis thaliana
AT4G01550
D
0.986
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
0.888
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
0.917
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.942
Cagra.0334s0001
Capsella grandiflora
Cagra.0334s0001
I
0.878
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.915
Bostr.5325s0018
Boechera stricta
Bostr.5325s0018
I
0.905
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.925
Bostr.5325s0008
Boechera stricta
Bostr.5325s0008
I
0.905
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.988
Bostr.4825s0021
Boechera stricta
Bostr.4825s0021
I
0.922
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.939
Bostr.10064s0010
Boechera stricta
Bostr.10064s0010
I
0.931
mgf022344m
Mimulus guttatus
mgf022344m
I
0.883
Pm028722
Prunus mume
Pm028722
I
0.887
Ca_27204
Cicer arietinum
Ca_27204
I
0.885
Ca_20988
Cicer arietinum
Ca_20988
I
0.909
Ca_04069
Cicer arietinum
Ca_04069
I
0.887
TCM_015535
Theobroma cacao
TCM_015535
I
0.872
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.988
MDP0000282616
Malus domestica
MDP0000282616
I
0.885
anac067
Arabidopsis thaliana
AT4G01520
I
0.957
Thhalv10007665m.g
Eutrema salsugineum
Thhalv10007665m.g
I
0.904
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
0.886
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
0.890
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
0.886
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
0.907
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.903
SapurV1A.0003s0330
Salix purpurea
SapurV1A.0003s0330
I
0.922
MDP0000575835
Malus domestica
MDP0000575835
I
0.908
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.964
MDP0000231843
Malus domestica
MDP0000231843
I
0.883
MDP0000214515
Malus domestica
MDP0000214515
I
0.888
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
0.892
Gorai.004G125900
Gossypium raimondii
Gorai.004G125900
I
0.889
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.901
Carubv10009451m.g
Capsella rubella
Carubv10009451m.g
I
0.889
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
0.888
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.989
Bra027596
Brassica rapa
Bra027596
I
0.950
PRUPE_ppb017658mg
Prunus persica
PRUPE_ppb017658mg
I
0.873
GRMZM2G003715
Zea mays
GRMZM2G003715
I
0.886
GLYMA14G36840
Glycine max
GLYMA14G36840
I
0.888
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.986
fgenesh1_pg.C_scaffold_3000386
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000386
I
0.895
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.916
Bra036328
Brassica rapa
Bra036328
I
0.975
Bra036327
Brassica rapa
Bra036327
I
0.975
Bra036326
Brassica rapa
Bra036326
I
0.979
GSMUA_Achr1G03560_001
Musa acuminata
GSMUA_Achr1G03560_001
I
0.874
Bra008553
Brassica rapa
Bra008553
I
0.994
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.916
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.980
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.963
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.967
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.974
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.967
Bo5g002850
Brassica oleracea
Bo5g002850
I
0.896
Bo5g002810
Brassica oleracea
Bo5g002810
I
0.898
PGSC0003DMG400000555
Solanum tuberosum
PGSC0003DMG400000555
I
0.922
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
0.899
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
0.908
POPTR_0014s07210
Populus trichocarpa
POPTR_0014s07210
I
0.884
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
0.910
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
0.895
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
0.892
POPTR_0002s15560
Populus trichocarpa
POPTR_0002s15560
I
0.888
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
0.899
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
0.878
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
0.914
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.934
MTR_3g093050
Medicago truncatula
MTR_3g093050
I
0.887
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
0.873
GSMUA_Achr3G00330_001
Musa acuminata
GSMUA_Achr3G00330_001
I
0.875
PRUPE_ppa023197mg
Prunus persica
PRUPE_ppa023197mg
N
0.898
PRUPE_ppa019780mg
Prunus persica
PRUPE_ppa019780mg
N
0.883
Pm018442
Prunus mume
Pm018442
N
0.895
Pm028718
Prunus mume
Pm028718
N
0.874
MDP0000198108
Malus domestica
MDP0000198108
N
0.893
Carubv10011623m.g
Capsella rubella
Carubv10011623m.g
N
0.872
Cagra.1968s0044
Capsella grandiflora
Cagra.1968s0044
N
0.872