CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo1g143840
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo1g143840
T292306_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ANAC050
M07200_2.00
Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a
0.959
0.956
ANAC050
M07201_2.00
Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a
0.959
0.956
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo1g143840.1
NAC/NAM
30
156
APGFRFHPTDEELVSYYLKRKVLGKPVRFDAIGEVDIYKHEPWDLAVFSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGKDREIRRDVQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANAC050
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_3000864
I
0.959
ANAC050
Arabidopsis thaliana
AT3G10480
D
0.959
ANAC052
Arabidopsis thaliana
AT3G10490
I
0.959
ANAC052
Arabidopsis lyrata
fgenesh2_kg.3__1083__AT3G10490.2
I
0.958
BGIOSGA026481
Oryza indica
BGIOSGA026481
I
0.894
Bo1g143850
Brassica oleracea
Bo1g143850
I
0.964
Bo3g062700
Brassica oleracea
Bo3g062700
I
0.949
Bo3g062710
Brassica oleracea
Bo3g062710
I
0.912
Bo5g137360
Brassica oleracea
Bo5g137360
I
0.944
Bostr.2128s0008
Boechera stricta
Bostr.2128s0008
N
0.871
Bostr.22252s0011
Boechera stricta
Bostr.22252s0011
I
0.959
Bostr.22252s0012
Boechera stricta
Bostr.22252s0012
I
0.959
Bra001365
Brassica rapa
Bra001365
I
0.949
Bra001366
Brassica rapa
Bra001366
I
0.926
Bra029844
Brassica rapa
Bra029844
I
0.944
Bra034118
Brassica rapa
Bra034118
I
0.964
Bra034119
Brassica rapa
Bra034119
I
0.969
BRADI3G12470
Brachypodium distachyon
BRADI3G12470
I
0.900
BRADI3G56080
Brachypodium distachyon
BRADI3G56080
I
0.880
Cagra.0834s0028
Capsella grandiflora
Cagra.0834s0028
I
0.957
Cagra.0834s0029
Capsella grandiflora
Cagra.0834s0029
I
0.959
Cagra.9217s0020
Capsella grandiflora
Cagra.9217s0020
I
0.918
Carubv10003768m.g
Capsella rubella
Carubv10003768m.g
I
0.889
Carubv10013564m.g
Capsella rubella
Carubv10013564m.g
I
0.957
Carubv10013694m.g
Capsella rubella
Carubv10013694m.g
I
0.959
cassava22912.valid.m1
Manihot esculenta
cassava22912.valid.m1
I
0.925
Ca_08371
Cicer arietinum
Ca_08371
I
0.905
chr5.CM0909.750.nc
Lotus japonicus
chr5.CM0909.750.nc
I
0.903
Ciclev10031606m.g
Citrus clementina
Ciclev10031606m.g
I
0.933
Cla020838
Citrullus lanatus
Cla020838
I
0.894
Cucsa.308760
Cucumis sativus
Cucsa.308760
I
0.896
F775_27564
Aegilops tauschii
F775_27564
I
0.882
GLYMA10G34130
Glycine max
GLYMA10G34130
I
0.906
GLYMA20G33430
Glycine max
GLYMA20G33430
I
0.906
Gorai.009G309300
Gossypium raimondii
Gorai.009G309300
I
0.931
Gorai.011G234200
Gossypium raimondii
Gorai.011G234200
I
0.911
Gorai.012G007000
Gossypium raimondii
Gorai.012G007000
I
0.929
GRMZM2G113950
Zea mays
GRMZM2G113950
I
0.878
LPERR08G20450
Leersia perrieri
LPERR08G20450
I
0.880
Lus10023537.g
Linum usitatissimum
Lus10023537.g
I
0.882
Lus10037939.g
Linum usitatissimum
Lus10037939.g
I
0.924
Lus10038670.g
Linum usitatissimum
Lus10038670.g
I
0.924
MDP0000258167
Malus domestica
MDP0000258167
I
0.911
MDP0000437676
Malus domestica
MDP0000437676
I
0.895
mgf000623m
Mimulus guttatus
mgf000623m
I
0.874
mgf004743m
Mimulus guttatus
mgf004743m
I
0.908
MTR_1g090720
Medicago truncatula
MTR_1g090720
I
0.902
OB08G30590
Oryza brachyantha
OB08G30590
I
0.884
OBART08G23760
Oryza barthii
OBART08G23760
I
0.894
OGLUM08G25240
Oryza glumaepatula
OGLUM08G25240
I
0.894
OLONG_023179
Oryza longistaminata
OLONG_023179
I
0.894
OMERI08G18580
Oryza meridionalis
OMERI08G18580
I
0.894
ONIVA08G26810
Oryza nivara
ONIVA08G26810
I
0.894
OPUNC08G21700
Oryza punctata
OPUNC08G21700
I
0.894
orange1.1g014130m.g
Citrus sinensis
orange1.1g014130m.g
I
0.933
ORGLA08G0191600
Oryza glaberrima
ORGLA08G0191600
I
0.894
ORUFI08G26250
Oryza rufipogon
ORUFI08G26250
I
0.894
OS08G0562200
Oryza sativa
OS08G0562200
I
0.894
Pavir.Aa00085
Panicum virgatum
Pavir.Aa00085
I
0.878
Pavir.Ab03009
Panicum virgatum
Pavir.Ab03009
I
0.878
Pavir.Fa00048
Panicum virgatum
Pavir.Fa00048
I
0.883
Pavir.Fb02407
Panicum virgatum
Pavir.Fb02407
I
0.883
PGSC0003DMG401023373
Solanum tuberosum
PGSC0003DMG401023373
I
0.885
PGSC0003DMG402023373
Solanum tuberosum
PGSC0003DMG402023373
I
0.880
PK06477.1
Cannabis sativa
PK06477.1
I
0.902
Pm017547
Prunus mume
Pm017547
I
0.911
POPTR_0010s23630
Populus trichocarpa
POPTR_0010s23630
I
0.920
SapurV1A.0213s0310
Salix purpurea
SapurV1A.0213s0310
I
0.919
Sb04g037720
Sorghum bicolor
Sb04g037720
I
0.878
Sb07g023900
Sorghum bicolor
Sb07g023900
I
0.885
Si013361m.g
Setaria italica
Si013361m.g
I
0.880
Si016620m.g
Setaria italica
Si016620m.g
I
0.877
Solyc05g055470.2
Solanum lycopersicum
Solyc05g055470.2
I
0.885
Solyc05g055480.2
Solanum lycopersicum
Solyc05g055480.2
I
0.883
TCM_043357
Theobroma cacao
TCM_043357
I
0.921
Thhalv10020717m.g
Eutrema salsugineum
Thhalv10020717m.g
I
0.957
Thhalv10020745m.g
Eutrema salsugineum
Thhalv10020745m.g
I
0.957
Traes_6AL_8BA1FF8B2
Triticum aestivum
Traes_6AL_8BA1FF8B2
I
0.876
Traes_7BL_FB5FAC1E8
Triticum aestivum
Traes_7BL_FB5FAC1E8
I
0.882
Traes_7DS_9FBF54244
Triticum aestivum
Traes_7DS_9FBF54244
I
0.882
TRIUR3_33524
Triticum urartu
TRIUR3_33524
I
0.882
VIT_13s0019g05230
Vitis vinifera
VIT_13s0019g05230
I
0.893
VIT_13s0019g05240
Vitis vinifera
VIT_13s0019g05240
I
0.898