CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra021856
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra021856
T292607_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC083
M02374_2.00
Arabidopsis thaliana
WYACGYAANN
NNTTRCGTRW
PBM
Weirauch et al.(2014)
pTH7308
0.879
0.741
NAC083
M07230_2.00
Arabidopsis thaliana
TRCKTRWNNNDYAMG
CKTRHNNNWYAMGYA
Dap-seq
OMalley et al.(2016)
ANAC083_colamp_a
0.879
0.741
NAC083
M07231_2.00
Arabidopsis thaliana
TTNCKTRWNNHDYACGYWA
TWRCGTRHDNNWYAMGNAA
Dap-seq
OMalley et al.(2016)
ANAC083_col_v3a
0.879
0.741
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra021856.1-P
NAC/NAM
15
135
PPGFRFHPTDEELVVQYLCRKVTGLPLPASVIPDIDICKADPWDLPGDCESERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDKQIGGNKLVGMKKTLVFYKGKPPNGTRTNWVLHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NAC083
Arabidopsis thaliana
AT5G13180
D
0.879
Cla011059
Citrullus lanatus
Cla011059
I
0.889
PK12461.1
Cannabis sativa
PK12461.1
I
0.893
Pm007070
Prunus mume
Pm007070
I
0.899
30128.m009035
Ricinus communis
30128.m009035
I
0.882
cassava1138.valid.m1
Manihot esculenta
cassava1138.valid.m1
I
0.882
cassava12891.valid.m1
Manihot esculenta
cassava12891.valid.m1
I
0.881
Cucsa.349370
Cucumis sativus
Cucsa.349370
I
0.899
Aquca_021_00051
Aquilegia coerulea
Aquca_021_00051
I
0.875
Bostr.23794s0753
Boechera stricta
Bostr.23794s0753
I
0.915
Ciclev10032547m.g
Citrus clementina
Ciclev10032547m.g
I
0.875
Eucgr.B03537
Eucalyptus grandis
Eucgr.B03537
I
0.887
Gorai.005G195300
Gossypium raimondii
Gorai.005G195300
I
0.901
Gorai.012G125500
Gossypium raimondii
Gorai.012G125500
I
0.892
MDP0000126517
Malus domestica
MDP0000126517
I
0.880
MDP0000130123
Malus domestica
MDP0000130123
I
0.880
orange1.1g030727m.g
Citrus sinensis
orange1.1g030727m.g
I
0.875
SapurV1A.0173s0020
Salix purpurea
SapurV1A.0173s0020
I
0.892
SapurV1A.0453s0210
Salix purpurea
SapurV1A.0453s0210
I
0.903
Thhalv10014495m.g
Eutrema salsugineum
Thhalv10014495m.g
I
0.910
Thhalv10017152m.g
Eutrema salsugineum
Thhalv10017152m.g
I
0.939
NAC041
Arabidopsis thaliana
AT2G33480
I
0.924
ANAC083
Vitis vinifera
VIT_01s0146g00280
I
0.880
Bo2g011120
Brassica oleracea
Bo2g011120
I
0.917
Bo3g009040
Brassica oleracea
Bo3g009040
I
0.915
Bo4g043670
Brassica oleracea
Bo4g043670
I
0.924
Bo4g181990
Brassica oleracea
Bo4g181990
I
0.963
Bo9g168950
Brassica oleracea
Bo9g168950
I
0.913
Bra005492
Brassica rapa
Bra005492
I
0.924
Bra006186
Brassica rapa
Bra006186
I
0.911
Bra008849
Brassica rapa
Bra008849
I
0.917
Bra023395
Brassica rapa
Bra023395
I
0.908
ANAC041
Arabidopsis lyrata
fgenesh2_kg.4__1354__AT2G33480.1
I
0.924
GLYMA08G47520
Glycine max
GLYMA08G47520
I
0.875
GLYMA18G53954
Glycine max
GLYMA18G53954
I
0.876
POPTR_0001s13380
Populus trichocarpa
POPTR_0001s13380
I
0.895
POPTR_0003s16490
Populus trichocarpa
POPTR_0003s16490
I
0.893
PRUPE_ppa010222mg
Prunus persica
PRUPE_ppa010222mg
I
0.899
ANAC083
Arabidopsis lyrata
scaffold_601328.1
I
0.879
TCM_008477
Theobroma cacao
TCM_008477
I
0.893
Cla001517
Citrullus lanatus
Cla001517
I
0.899
evm.TU.supercontig_4.138
Carica papaya
evm.TU.supercontig_4.138
N
0.886
Carubv10023833m.g
Capsella rubella
Carubv10023833m.g
N
0.902
Cagra.0301s0034
Capsella grandiflora
Cagra.0301s0034
N
0.902
GSMUA_Achr10G11910_001
Musa acuminata
GSMUA_Achr10G11910_001
N
0.892
SapurV1A.0614s0190
Salix purpurea
SapurV1A.0614s0190
N
0.877
SapurV1A.1580s0010
Salix purpurea
SapurV1A.1580s0010
N
0.877
30147.m014441
Ricinus communis
30147.m014441
N
0.887