CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra033298
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra033298
T292665_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC004
M07161_2.00
Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG
Dap-seq
OMalley et al.(2016)
ANAC004_col_a
0.901
0.713
NAC004
M07162_2.00
Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW
Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a
0.901
0.713
NAC001
M00969_2.00
Arabidopsis thaliana
NYACGBHANN
NNTDVCGTRN
PBM
Lindemose et al.(2014)
FL092
0.888
0.509
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra033298.1-P
NAC/NAM
4
128
RVGFRFIPTDEEIVDYYLRLKNLGGDTSHVDKAISTVDICSFEPWELPSKSRRESRDQIWYFFGRKDNKYNRGERQSRKTRSGFWKKTGVTTEIIRKRGNREKIGEKRVLVFHSKPEWVMHEYVS
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g002880
Brassica oleracea
Bo5g002880
I
0.993
Bostr.5325s0016
Boechera stricta
Bostr.5325s0016
I
0.904
NAC004
Arabidopsis thaliana
AT1G02230
D
0.901
ANAC004
Arabidopsis lyrata
Al_scaffold_0001_137
I
0.893
NAC001
Arabidopsis thaliana
AT1G01010
D
0.888
orange1.1g013027m.g
Citrus sinensis
orange1.1g013027m.g
N
0.872