POPTR_0005s22180 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0005s22180 T295255_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC13
M07170_2.00 		Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA		 Dap-seq
OMalley et al.(2016)
ANAC013_col_a 		0.893 0.728
ANAC13
M07171_2.00 		Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG		 Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a 		0.893 0.728
ANAC13
M11077_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC013_Q2 		0.893 0.728
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s22180.1 NAC/NAM 17 143

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I 0.968
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.968
SapurV1A.0348s0040 Salix purpurea SapurV1A.0348s0040 I 0.964
Cla013854 Citrullus lanatus Cla013854 I 0.958
Cucsa.364130 Cucumis sativus Cucsa.364130 N 0.951
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.942
Ciclev10000612m.g Citrus clementina Ciclev10000612m.g I 0.941
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I 0.939
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.938
TCM_036587 Theobroma cacao TCM_036587 I 0.935
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.935
Gorai.005G076200 Gossypium raimondii Gorai.005G076200 I 0.933
PRUPE_ppa003410mg Prunus persica PRUPE_ppa003410mg N 0.928
Pm022358 Prunus mume Pm022358 N 0.928
gene27539-v1.0-hybrid Fragaria vesca gene27539-v1.0-hybrid N 0.928
Lus10028713.g Linum usitatissimum Lus10028713.g I 0.927
mg018130m Mimulus guttatus mg018130m I 0.926
GLYMA10G36360 Glycine max GLYMA10G36360 N 0.924
MDP0000146969 Malus domestica MDP0000146969 I 0.920
MDP0000169485 Malus domestica MDP0000169485 I 0.920
GLYMA20G31210 Glycine max GLYMA20G31210 N 0.919
MDP0000852271 Malus domestica MDP0000852271 I 0.919
Ca_04337 Cicer arietinum Ca_04337 N 0.911
MTR_1g097300 Medicago truncatula MTR_1g097300 N 0.909
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I 0.908
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I 0.907
Eucgr.F02771 Eucalyptus grandis Eucgr.F02771 N 0.906
Solyc12g056790.1 Solanum lycopersicum Solyc12g056790.1 I 0.903
ANAC13 Arabidopsis lyrata fgenesh2_kg.1__3425__AT1G32870.2 I 0.902
Cla016588 Citrullus lanatus Cla016588 N 0.901
Aquca_017_00010 Aquilegia coerulea Aquca_017_00010 N 0.901
Bo7g057730 Brassica oleracea Bo7g057730 I 0.897
LjSGA_007769.1 Lotus japonicus LjSGA_007769.1 N 0.895
ANAC13 Arabidopsis thaliana AT1G32870 D 0.893
Bostr.3359s0074 Boechera stricta Bostr.3359s0074 I 0.891
Cagra.1443s0015 Capsella grandiflora Cagra.1443s0015 I 0.890
Carubv10008817m.g Capsella rubella Carubv10008817m.g I 0.888
Thhalv10007369m.g Eutrema salsugineum Thhalv10007369m.g I 0.883
Bra012342 Brassica rapa Bra012342 I 0.879
cassava19069.valid.m1 Manihot esculenta cassava19069.valid.m1 I 0.879