CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0007s13910
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0007s13910
T295277_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC105
M00980_2.00
Arabidopsis thaliana
NYWHKNHWNN
NNWDNMDWRN
PBM
Lindemose et al.(2014)
VND3
0.951
0.868
NAC105
M07245_2.00
Arabidopsis thaliana
NTTGCTTVNNNHNYAMG
CKTRNDNNNBAAGCAAN
Dap-seq
OMalley et al.(2016)
VND3_colamp_a
0.951
0.868
NAC105
M07246_2.00
Arabidopsis thaliana
TTGCTTVHNNHNYAMG
CKTRNDNNDBAAGCAA
Dap-seq
OMalley et al.(2016)
VND3_col
0.951
0.868
NAC037
M07187_2.00
Arabidopsis thaliana
CKTVNDNHNYAMG
CKTRNDNHNBAMG
Dap-seq
OMalley et al.(2016)
VND1_col_a
0.950
0.947
ANAC076
M07224_2.00
Arabidopsis thaliana
TRCKTVHNNHNYAMG
CKTRNDNNDBAMGYA
Dap-seq
OMalley et al.(2016)
VND2_col_a
0.945
0.965
ANAC076
M07225_2.00
Arabidopsis thaliana
TTGCKTVHNNHNYAMGYHAHNNN
NNNDTDRCKTRNDNNDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND2_colamp_a
0.945
0.965
NAC030
M00974_2.00
Arabidopsis thaliana
NYACGBMWNN
NNWKVCGTRN
PBM
Lindemose et al.(2014)
VND7
0.910
0.807
NAC007
M07164_2.00
Arabidopsis thaliana
TTRCKTVHDNNNYAMG
CKTRNNNHDBAMGYAA
Dap-seq
OMalley et al.(2016)
VND4_colamp_a
0.888
0.833
NAC007
M07165_2.00
Arabidopsis thaliana
TGCKTVHDNHDYAMG
CKTRHDNHDBAMGCA
Dap-seq
OMalley et al.(2016)
VND4_col
0.888
0.833
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.885
0.772
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.885
0.772
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0007s13910.1
NAC/NAM
9
136
PPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYDKTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
324 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI002322
Acyrthosiphon pisum
ACYPI002322
I
ENSAMEG00000005678
Ailuropoda melanoleuca
ENSAMEG00000005678
I
ENSAMEG00000008348
Ailuropoda melanoleuca
ENSAMEG00000008348
I
ENSAMEG00000010946
Ailuropoda melanoleuca
ENSAMEG00000010946
I
Alligator_sinensis_CCG000441.1
Alligator sinensis
Alligator_sinensis_CCG000441.1
I
Alligator_sinensis_CCG010545.1
Alligator sinensis
Alligator_sinensis_CCG010545.1
I
ENSAPLG00000005528
Anas platyrhynchos
ENSAPLG00000005528
I
ENSAPLG00000015603
Anas platyrhynchos
ENSAPLG00000015603
I
HMG20A
Anolis carolinensis
ENSACAG00000011520
I
GB41600
Apis mellifera
GB41600
I
Afo_R007008
Aptenodytes forsteri
Afo_R007008
I
Afo_R007636
Aptenodytes forsteri
Afo_R007636
I
ENSAMXG00000013048
Astyanax mexicanus
ENSAMXG00000013048
I
ENSAMXG00000017986
Astyanax mexicanus
ENSAMXG00000017986
I
BGIBMGA005325
Bombyx mori
BGIBMGA005325
I
ENSP00000336856-D1
Bos grunniens
ENSP00000336856-D1
I
HMG20A
Bos taurus
ENSBTAG00000020441
I
ENSBTAG00000047668
Bos taurus
ENSBTAG00000047668
I
estExt_fgenesh2_pg.C_1350020
Branchiostoma floridae
estExt_fgenesh2_pg.C_1350020
I
estExt_fgenesh2_pg.C_2300011
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300011
I
estExt_fgenesh2_pg.C_2300014
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300014
I
estExt_fgenesh2_pg.C_4800003
Branchiostoma floridae
estExt_fgenesh2_pg.C_4800003
I
Brh_R011859
Buceros rhinoceros
Brh_R011859
I
HMG20B
Callithrix jacchus
ENSCJAG00000003488
I
HMG20A
Callithrix jacchus
ENSCJAG00000011131
I
Aan_R011684
Calypte anna
Aan_R011684
I
Aan_R011791
Calypte anna
Aan_R011791
I
HMG20A
Canis familiaris
ENSCAFG00000018061
I
HMG20B
Canis familiaris
ENSCAFG00000019215
I
CapteG155070
Capitella teleta
CapteG155070
I
HMG20B
Cavia porcellus
ENSCPOG00000010777
I
HMG20A
Cavia porcellus
ENSCPOG00000011704
I
ENSCPOG00000020879
Cavia porcellus
ENSCPOG00000020879
I
Cmyd_10002377
Chelonia mydas
Cmyd_10002377
I
Cmyd_10009674
Chelonia mydas
Cmyd_10009674
I
Cmyd_10010094
Chelonia mydas
Cmyd_10010094
I
ENSCSAG00000011140
Chlorocebus sabaeus
ENSCSAG00000011140
I
ENSCSAG00000014734
Chlorocebus sabaeus
ENSCSAG00000014734
I
HMG20A
Choloepus hoffmanni
ENSCHOG00000012116
I
CLEC002862
Cimex lectularius
CLEC002862
I
ENSCING00000018888
Ciona intestinalis
ENSCING00000018888
N
KGM_20768
Danaus plexippus
KGM_20768
N
hmg20a
Danio rerio
ENSDARG00000031198
I
hmg20b
Danio rerio
ENSDARG00000042045
I
HMG20A
Dasypus novemcinctus
ENSDNOG00000034143
I
YQE_04289
Dendroctonus ponderosae
YQE_04289
N
Hmg20a
Dipodomys ordii
ENSDORG00000000623
I
ENSDORG00000012598
Dipodomys ordii
ENSDORG00000012598
I
HMG20A
Echinops telfairi
ENSETEG00000015812
I
HMG20A
Erinaceus europaeus
ENSEEUG00000004472
I
HMG20A
Felis catus
ENSFCAG00000022539
I
HMG20B
Felis catus
ENSFCAG00000026167
I
ENSFALG00000010751
Ficedula albicollis
ENSFALG00000010751
I
ENSFALG00000011609
Ficedula albicollis
ENSFALG00000011609
I
ENSGMOG00000011717
Gadus morhua
ENSGMOG00000011717
I
ENSGMOG00000015452
Gadus morhua
ENSGMOG00000015452
I
ENSGALG00000002746
Gallus gallus
ENSGALG00000002746
I
HMG20B
Gallus gallus
ENSGALG00000027838
I
hmg20a
Gasterosteus aculeatus
ENSGACG00000003466
I
hmg20b
Gasterosteus aculeatus
ENSGACG00000012785
I
Gfo_R004366
Geospiza fortis
Gfo_R004366
I
Gfo_R007604
Geospiza fortis
Gfo_R007604
I
HMG20A
Gorilla gorilla
ENSGGOG00000008439
I
HMG20B
Gorilla gorilla
ENSGGOG00000014805
I
HHAL010521-PA
Halyomorpha halys
HHAL010521-PA
I
Hsal_13222--XP_625193.1_APIME
Harpegnathos saltator
Hsal_13222--XP_625193.1_APIME
I
HMEL017569
Heliconius melpomene
HMEL017569
I
HelroG189739
Helobdella robusta
HelroG189739
N
HMG20B
Homo sapiens
ENSG00000064961
I
HMG20A
Homo sapiens
ENSG00000140382
I
XP_002158984.1
Hydra magnipapillata
XP_002158984.1
I
XP_002161760.1
Hydra magnipapillata
XP_002161760.1
I
ENSSTOG00000013818
Ictidomys tridecemlineatus
ENSSTOG00000013818
I
ENSSTOG00000022314
Ictidomys tridecemlineatus
ENSSTOG00000022314
I
ENSLACG00000004599
Latimeria chalumnae
ENSLACG00000004599
I
ENSLACG00000010699
Latimeria chalumnae
ENSLACG00000010699
I
ENSLOCG00000010117
Lepisosteus oculatus
ENSLOCG00000010117
I
ENSLOCG00000014255
Lepisosteus oculatus
ENSLOCG00000014255
I
LotgiG196090
Lottia gigantea
LotgiG196090
I
HMG20B
Loxodonta africana
ENSLAFG00000007845
I
HMG20A
Loxodonta africana
ENSLAFG00000018273
I
ENSMMUP00000031974
Macaca fascicularis
ENSMMUP00000031974
I
ENSP00000371133
Macaca fascicularis
ENSP00000371133
I
HMG20A
Macaca mulatta
ENSMMUG00000007430
I
ENSMMUG00000028932
Macaca mulatta
ENSMMUG00000028932
I
ENSMEUG00000001270
Macropus eugenii
ENSMEUG00000001270
I
ENSMEUG00000016429
Macropus eugenii
ENSMEUG00000016429
I
HMG20B
Meleagris gallopavo
ENSMGAG00000001362
I
HMG20A
Meleagris gallopavo
ENSMGAG00000003179
I
MCINX003064
Melitaea cinxia
MCINX003064
I
HMG20A
Microcebus murinus
ENSMICG00000011025
I
HMG20B
Monodelphis domestica
ENSMODG00000006884
I
HMG20A
Monodelphis domestica
ENSMODG00000012113
I
ENSMPUG00000003925
Mustela putorius furo
ENSMPUG00000003925
I
ENSMPUG00000017330
Mustela putorius furo
ENSMPUG00000017330
I
Hmg20b
Mus musculus
ENSMUSG00000020232
D
Hmg20a
Mus musculus
ENSMUSG00000032329
I
Myotis_brandtii_HMG20A_10005450
Myotis brandtii
Myotis_brandtii_HMG20A_10005450
I
Myotis_brandtii_HMG20B_10016321
Myotis brandtii
Myotis_brandtii_HMG20B_10016321
I
HMG20A
Myotis lucifugus
ENSMLUG00000011648
I
HMG20B
Myotis lucifugus
ENSMLUG00000022392
I
NV11068
Nasonia vitripennis
NV11068
I
NEMVEDRAFT_v1g105457
Nematostella vectensis
NEMVEDRAFT_v1g105457
I
NEMVEDRAFT_v1g87244
Nematostella vectensis
NEMVEDRAFT_v1g87244
I
ENSNLEG00000008357
Nomascus leucogenys
ENSNLEG00000008357
I
HMG20A
Ochotona princeps
ENSOPRG00000011000
I
Ocbimv22031259m.g
Octopus bimaculoides
Ocbimv22031259m.g
I
ENSONIG00000004838
Oreochromis niloticus
ENSONIG00000004838
I
ENSONIG00000012862
Oreochromis niloticus
ENSONIG00000012862
I
HMG20A
Ornithorhynchus anatinus
ENSOANG00000009993
I
HMG20B
Ornithorhynchus anatinus
ENSOANG00000013515
I
HMG20A
Oryctolagus cuniculus
ENSOCUG00000005648
I
hmg20a
Oryzias latipes
ENSORLG00000001794
I
hmg20b
Oryzias latipes
ENSORLG00000004640
I
HMG20A
Otolemur garnettii
ENSOGAG00000006630
I
HMG20B
Otolemur garnettii
ENSOGAG00000014171
I
ENSOARG00000001765
Ovis aries
ENSOARG00000001765
I
ENSOARG00000005838
Ovis aries
ENSOARG00000005838
I
ENSOARG00000012318
Ovis aries
ENSOARG00000012318
I
HMG20A
Pan troglodytes
ENSPTRG00000007326
I
ENSPANG00000010575
Papio anubis
ENSPANG00000010575
I
ENSPANG00000015844
Papio anubis
ENSPANG00000015844
I
ENSPSIG00000010923
Pelodiscus sinensis
ENSPSIG00000010923
I
ENSPSIG00000013006
Pelodiscus sinensis
ENSPSIG00000013006
I
ENSPFOG00000003017
Poecilia formosa
ENSPFOG00000003017
I
ENSPFOG00000014087
Poecilia formosa
ENSPFOG00000014087
I
Pvit_01997
Pogona vitticeps
Pvit_01997
I
Pvit_08123
Pogona vitticeps
Pvit_08123
I
ENSPPYG00000006683
Pongo abelii
ENSPPYG00000006683
I
ENSPPYG00000009378
Pongo abelii
ENSPPYG00000009378
I
HMG20B
Procavia capensis
ENSPCAG00000010772
I
HMG20A
Procavia capensis
ENSPCAG00000013879
I
HMG20B
Pteropus vampyrus
ENSPVAG00000004300
I
Hmg20a
Rattus norvegicus
ENSRNOG00000016905
I
Hmg20b
Rattus norvegicus
ENSRNOG00000020601
I
RPRC008043
Rhodnius prolixus
RPRC008043
I
Sakowv30033800m.g
Saccoglossus kowalevskii
Sakowv30033800m.g
I
ENSSHAG00000007226
Sarcophilus harrisii
ENSSHAG00000007226
I
ENSSHAG00000012311
Sarcophilus harrisii
ENSSHAG00000012311
I
HMG20A
Sorex araneus
ENSSARG00000012609
I
SMAR000790
Strigamia maritima
SMAR000790
I
SMAR002604
Strigamia maritima
SMAR002604
I
SPU_004776
Strongylocentrotus purpuratus
SPU_004776
I
SPU_018371
Strongylocentrotus purpuratus
SPU_018371
I
HMG20A
Sus scrofa
ENSSSCG00000001871
I
ENSSSCG00000024002
Sus scrofa
ENSSSCG00000024002
I
HMG20B
Taeniopygia guttata
ENSTGUG00000000169
I
HMG20A
Taeniopygia guttata
ENSTGUG00000003690
I
hmg20a
Takifugu rubripes
ENSTRUG00000016127
I
eef2l2
Takifugu rubripes
ENSTRUG00000017921
I
hmg20a
Tetraodon nigroviridis
ENSTNIG00000008460
I
hmg20b
Tetraodon nigroviridis
ENSTNIG00000010630
I
TriadG23407
Trichoplax adhaerens
TriadG23407
I
HMG20A
Tupaia belangeri
ENSTBEG00000015283
I
HMG20A
Tursiops truncatus
ENSTTRG00000006500
I
HMG20B
Tursiops truncatus
ENSTTRG00000008832
I
Tal_R006697
Tyto alba
Tal_R006697
I
HMG20A
Vicugna pacos
ENSVPAG00000010013
I
hmg20b.S
Xenopus laevis
XB-GENE-17338323
I
hmg20b.L
Xenopus laevis
XB-GENE-5809135
I
hmg20a.L
Xenopus laevis
XB-GENE-955359
I
hmg20b
Xenopus tropicalis
XB-GENE-5809048
I
hmg20a
Xenopus tropicalis
XB-GENE-955353
I
ENSXMAG00000000587
Xiphophorus maculatus
ENSXMAG00000000587
I
ENSXMAG00000012647
Xiphophorus maculatus
ENSXMAG00000012647
I
L798_15457
Zootermopsis nevadensis
L798_15457
I