POPTR_0010s23650 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0010s23650 T295294_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC078
M02372_2.00 		Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN		 PBM
Weirauch et al.(2014)
pTH7209 		0.936 0.921
NAC078
M07226_2.00 		Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA		 Dap-seq
OMalley et al.(2016)
NAC2_colamp_a 		0.936 0.921
NAC078
M07227_2.00 		Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH		 Dap-seq
OMalley et al.(2016)
NAC2_col_v3a 		0.936 0.921
NAC078
M11083_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC078_Q2 		0.936 0.921
NAC053
M07202_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAG
CTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a 		0.925 0.904
NAC053
M07203_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAGH
DCTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_col 		0.925 0.904
NAC053
M11079_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G10500_Q2 		0.925 0.904
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s23650.1 NAC/NAM 11 137
POPTR_0010s23650.2 NAC/NAM 11 137

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0213s0330 Salix purpurea SapurV1A.0213s0330 I 0.968
POPTR_0008s03170 Populus trichocarpa POPTR_0008s03170 I 0.956
28872.m000248 Ricinus communis 28872.m000248 I 0.951
cassava22911.valid.m1 Manihot esculenta cassava22911.valid.m1 I 0.944
Cla020837 Citrullus lanatus Cla020837 I 0.941
Cucsa.308770 Cucumis sativus Cucsa.308770 I 0.941
Bo3g002800 Brassica oleracea Bo3g002800 I 0.938
Bra005804 Brassica rapa Bra005804 I 0.937
PRUPE_ppa003239mg Prunus persica PRUPE_ppa003239mg I 0.937
Pm017550 Prunus mume Pm017550 I 0.937
PK11467.1 Cannabis sativa PK11467.1 I 0.937
NAC078 Arabidopsis thaliana AT5G04410 D 0.936
NAC2 Arabidopsis lyrata scaffold_600382.1 I 0.936
Bostr.2128s0007 Boechera stricta Bostr.2128s0007 I 0.936
Cagra.9217s0021 Capsella grandiflora Cagra.9217s0021 I 0.936
Bra028790 Brassica rapa Bra028790 I 0.935
MDP0000457996 Malus domestica MDP0000457996 I 0.935
MDP0000695714 Malus domestica MDP0000695714 I 0.935
Bo9g180050 Brassica oleracea Bo9g180050 I 0.933
Bra009456 Brassica rapa Bra009456 I 0.932
TCM_043360 Theobroma cacao TCM_043360 I 0.932
Thhalv10013110m.g Eutrema salsugineum Thhalv10013110m.g I 0.932
Ciclev10031147m.g Citrus clementina Ciclev10031147m.g I 0.930
orange1.1g007598m.g Citrus sinensis orange1.1g007598m.g I 0.930
SapurV1A.0394s0050 Salix purpurea SapurV1A.0394s0050 I 0.928
Bo1g143830 Brassica oleracea Bo1g143830 I 0.926
NAC053 Arabidopsis thaliana AT3G10500 D 0.925
anac053 Arabidopsis lyrata fgenesh2_kg.3__1085__AT3G10500.1 I 0.925
Cla013942 Citrullus lanatus Cla013942 I 0.925
Cucsa.186150 Cucumis sativus Cucsa.186150 I 0.925
Bostr.22252s0010 Boechera stricta Bostr.22252s0010 I 0.925
Bra034120 Brassica rapa Bra034120 I 0.923
Cagra.0834s0027 Capsella grandiflora Cagra.0834s0027 I 0.921
Carubv10013370m.g Capsella rubella Carubv10013370m.g I 0.921
Lus10017458.g Linum usitatissimum Lus10017458.g I 0.921
Thhalv10020438m.g Eutrema salsugineum Thhalv10020438m.g I 0.921
Lus10028824.g Linum usitatissimum Lus10028824.g N 0.916
Aquca_030_00013 Aquilegia coerulea Aquca_030_00013 I 0.901
GLYMA20G33390 Glycine max GLYMA20G33390 N 0.895
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.886
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.886
Ca_08371 Cicer arietinum Ca_08371 I 0.884
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I 0.882
chr5.CM0909.760.nc Lotus japonicus chr5.CM0909.760.nc N 0.881
Cla020838 Citrullus lanatus Cla020838 I 0.879
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.878
Gorai.009G309000 Gossypium raimondii Gorai.009G309000 I 0.878
Cucsa.308760 Cucumis sativus Cucsa.308760 I 0.875