CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold_301478.1
(
Arabidopsis lyrata
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
scaffold_301478.1
T295615_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_301478.1
NAC/NAM
19
143
PPGFRFHPRDDELVCDYLMRRTVRSLYQPVVLIDVDLNKCEPWDIPQMARVGGKKWYFYSQKDRKYTTGHRTNRATATGYWKATGKDRAIQRNGSLVGMRKTLVFYRGRAPKGRKTDWVMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Arabidopsis lyrata
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29650.m000275
Ricinus communis
29650.m000275
N
0.920
NAC1
Arabidopsis lyrata
Al_scaffold_0001_4992
N
0.959
NAC021
Arabidopsis thaliana
AT1G56010
N
0.950
AT3G12977
Arabidopsis thaliana
AT3G12977
N
0.993
BGIOSGA007201
Oryza indica
BGIOSGA007201
N
0.904
Bo3g065240
Brassica oleracea
Bo3g065240
N
0.983
Bo3g185760
Brassica oleracea
Bo3g185760
N
0.952
Bo5g132990
Brassica oleracea
Bo5g132990
N
0.987
Bostr.3640s0073
Boechera stricta
Bostr.3640s0073
N
0.989
Bra001480
Brassica rapa
Bra001480
N
0.983
Bra030820
Brassica rapa
Bra030820
N
0.952
Bra034713
Brassica rapa
Bra034713
N
0.989
cassava27052.m1
Manihot esculenta
cassava27052.m1
I
0.880
Ca_13537
Cicer arietinum
Ca_13537
N
0.924
chr3.CM0279.430.nd
Lotus japonicus
chr3.CM0279.430.nd
N
0.912
Ciclev10021117m.g
Citrus clementina
Ciclev10021117m.g
N
0.948
Cla023574
Citrullus lanatus
Cla023574
N
0.904
Eucgr.F01449
Eucalyptus grandis
Eucgr.F01449
N
0.901
F775_30297
Aegilops tauschii
F775_30297
I
0.900
GLYMA08G18470
Glycine max
GLYMA08G18470
N
0.947
GRMZM2G167018
Zea mays
GRMZM2G167018
I
0.886
MTR_2g064470
Medicago truncatula
MTR_2g064470
N
0.911
OB03G10720
Oryza brachyantha
OB03G10720
N
0.871
OPUNC03G00610
Oryza punctata
OPUNC03G00610
N
0.902
PGSC0003DMG400022134
Solanum tuberosum
PGSC0003DMG400022134
N
0.938
SapurV1A.0085s0410
Salix purpurea
SapurV1A.0085s0410
N
0.940
Sb07g005610
Sorghum bicolor
Sb07g005610
I
0.896
Sb10g027100
Sorghum bicolor
Sb10g027100
N
0.926
TCM_032479
Theobroma cacao
TCM_032479
N
0.906
Thhalv10011659m.g
Eutrema salsugineum
Thhalv10011659m.g
N
0.954
Thhalv10021297m.g
Eutrema salsugineum
Thhalv10021297m.g
N
0.989
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.900
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.900