CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cla020838
(
Citrullus lanatus
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cla020838
T296594_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ANAC050
M07200_2.00
Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a
0.908
0.807
ANAC050
M07201_2.00
Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a
0.908
0.807
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla020838
NAC/NAM
31
157
APGFRFHPTDEELVIYYLKRKVCGKSFRFNAISEVDIYKSEPWDLAGKSRLKSRDQEYYFFSVLDKKYGNGARMNRATSQGYWKATGNDRPVRHDSRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Citrullus lanatus
TFs
77 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28872.m000248
Ricinus communis
28872.m000248
I
0.881
AMTR_s00071p00055960
Amborella trichopoda
AMTR_s00071p00055960
I
0.885
AMTR_s00140p00087970
Amborella trichopoda
AMTR_s00140p00087970
N
0.900
ANAC050
Arabidopsis thaliana
AT3G10480
D
0.920
ANAC052
Arabidopsis thaliana
AT3G10490
I
0.891
Bo1g143840
Brassica oleracea
Bo1g143840
I
0.894
Bo1g143850
Brassica oleracea
Bo1g143850
I
0.879
Bo5g137360
Brassica oleracea
Bo5g137360
I
0.878
Bostr.22252s0011
Boechera stricta
Bostr.22252s0011
I
0.908
Bostr.22252s0012
Boechera stricta
Bostr.22252s0012
I
0.908
Bra029844
Brassica rapa
Bra029844
I
0.878
Bra034118
Brassica rapa
Bra034118
I
0.879
Bra034119
Brassica rapa
Bra034119
I
0.894
Cagra.0834s0028
Capsella grandiflora
Cagra.0834s0028
I
0.904
Cagra.0834s0029
Capsella grandiflora
Cagra.0834s0029
I
0.908
Carubv10013564m.g
Capsella rubella
Carubv10013564m.g
I
0.904
Carubv10013694m.g
Capsella rubella
Carubv10013694m.g
I
0.908
cassava22912.valid.m1
Manihot esculenta
cassava22912.valid.m1
I
0.923
Ca_08371
Cicer arietinum
Ca_08371
I
0.965
chr5.CM0909.750.nc
Lotus japonicus
chr5.CM0909.750.nc
I
0.964
Ciclev10031606m.g
Citrus clementina
Ciclev10031606m.g
I
0.906
Cla020837
Citrullus lanatus
Cla020837
I
0.891
Cucsa.308760
Cucumis sativus
Cucsa.308760
I
0.970
Cucsa.308770
Cucumis sativus
Cucsa.308770
I
0.891
Eucgr.G02740
Eucalyptus grandis
Eucgr.G02740
N
0.891
Eucgr.J01038
Eucalyptus grandis
Eucgr.J01038
I
0.915
F775_27564
Aegilops tauschii
F775_27564
I
0.880
ANAC050
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_3000864
I
0.908
ANAC052
Arabidopsis lyrata
fgenesh2_kg.3__1083__AT3G10490.2
I
0.908
gene23561-v1.0-hybrid
Fragaria vesca
gene23561-v1.0-hybrid
I
0.943
GLYMA10G34130
Glycine max
GLYMA10G34130
I
0.964
GLYMA20G33430
Glycine max
GLYMA20G33430
I
0.964
Gorai.009G309300
Gossypium raimondii
Gorai.009G309300
I
0.917
Gorai.011G234200
Gossypium raimondii
Gorai.011G234200
I
0.902
Gorai.012G007000
Gossypium raimondii
Gorai.012G007000
I
0.922
LPERR08G20450
Leersia perrieri
LPERR08G20450
I
0.887
Lus10023537.g
Linum usitatissimum
Lus10023537.g
I
0.912
Lus10037939.g
Linum usitatissimum
Lus10037939.g
I
0.921
Lus10038670.g
Linum usitatissimum
Lus10038670.g
I
0.921
MDP0000258167
Malus domestica
MDP0000258167
I
0.949
MDP0000437676
Malus domestica
MDP0000437676
I
0.928
MDP0000457996
Malus domestica
MDP0000457996
I
0.891
MDP0000695714
Malus domestica
MDP0000695714
I
0.891
mgf000623m
Mimulus guttatus
mgf000623m
I
0.881
mgf004743m
Mimulus guttatus
mgf004743m
I
0.905
MTR_1g090720
Medicago truncatula
MTR_1g090720
I
0.962
OB08G30590
Oryza brachyantha
OB08G30590
I
0.887
orange1.1g014130m.g
Citrus sinensis
orange1.1g014130m.g
I
0.906
Pavir.Fa00048
Panicum virgatum
Pavir.Fa00048
I
0.881
Pavir.Fb02407
Panicum virgatum
Pavir.Fb02407
I
0.881
PGSC0003DMG400031071
Solanum tuberosum
PGSC0003DMG400031071
N
0.871
PGSC0003DMG400031072
Solanum tuberosum
PGSC0003DMG400031072
N
0.915
PGSC0003DMG401023373
Solanum tuberosum
PGSC0003DMG401023373
I
0.889
PGSC0003DMG402023373
Solanum tuberosum
PGSC0003DMG402023373
I
0.909
PK06477.1
Cannabis sativa
PK06477.1
I
0.961
PK11467.1
Cannabis sativa
PK11467.1
I
0.881
Pm017547
Prunus mume
Pm017547
I
0.924
Pm017550
Prunus mume
Pm017550
I
0.892
POPTR_0008s03170
Populus trichocarpa
POPTR_0008s03170
I
0.878
POPTR_0010s23630
Populus trichocarpa
POPTR_0010s23630
I
0.924
POPTR_0010s23650
Populus trichocarpa
POPTR_0010s23650
I
0.879
PRUPE_ppa003239mg
Prunus persica
PRUPE_ppa003239mg
I
0.892
SapurV1A.0213s0310
Salix purpurea
SapurV1A.0213s0310
I
0.923
SapurV1A.0213s0330
Salix purpurea
SapurV1A.0213s0330
I
0.879
Sb07g023900
Sorghum bicolor
Sb07g023900
I
0.883
Si013361m.g
Setaria italica
Si013361m.g
I
0.881
Solyc05g055470.2
Solanum lycopersicum
Solyc05g055470.2
I
0.913
Solyc05g055480.2
Solanum lycopersicum
Solyc05g055480.2
I
0.901
Solyc11g008000.1
Solanum lycopersicum
Solyc11g008000.1
I
0.876
TCM_043357
Theobroma cacao
TCM_043357
I
0.925
Thhalv10020717m.g
Eutrema salsugineum
Thhalv10020717m.g
I
0.904
Thhalv10020745m.g
Eutrema salsugineum
Thhalv10020745m.g
I
0.904
Traes_7BL_FB5FAC1E8
Triticum aestivum
Traes_7BL_FB5FAC1E8
I
0.880
Traes_7DS_9FBF54244
Triticum aestivum
Traes_7DS_9FBF54244
I
0.880
TRIUR3_33524
Triticum urartu
TRIUR3_33524
I
0.880
VIT_13s0019g05230
Vitis vinifera
VIT_13s0019g05230
I
0.924
VIT_13s0019g05240
Vitis vinifera
VIT_13s0019g05240
I
0.921