CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.3359s0074
(
Boechera stricta
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Bostr.3359s0074
T297309_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ANAC13
M07170_2.00
Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA
Dap-seq
OMalley et al.(2016)
ANAC013_col_a
0.965
0.956
ANAC13
M07171_2.00
Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG
Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a
0.965
0.956
ANAC13
M11077_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANAC013_Q2
0.965
0.956
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.3359s0074.1.p
NAC/NAM
11
135
APGFRFHPTDEELVVYYLKRKIRRKKLRVDAIGETDVYKFDPEDLPEKALYKTRDRQWFFFSLRDKKHGSRSSRATGSGYWKATGKDRVIKCDSRPVGEKKTLVFHRGRAPNGERTNWVMHEYTL
Links
Other
NAC/NAM
family TFs
Other
Boechera stricta
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANAC13
Arabidopsis lyrata
fgenesh2_kg.1__3425__AT1G32870.2
I
0.963
ANAC13
Arabidopsis thaliana
AT1G32870
D
0.965
Bo7g057730
Brassica oleracea
Bo7g057730
I
0.927
Bra012342
Brassica rapa
Bra012342
I
0.903
Cagra.1443s0015
Capsella grandiflora
Cagra.1443s0015
I
0.964
Carubv10008817m.g
Capsella rubella
Carubv10008817m.g
I
0.963
evm.TU.supercontig_26.135
Carica papaya
evm.TU.supercontig_26.135
I
0.882
Cla013854
Citrullus lanatus
Cla013854
I
0.883
Thhalv10007369m.g
Eutrema salsugineum
Thhalv10007369m.g
I
0.952
Gorai.009G260000
Gossypium raimondii
Gorai.009G260000
I
0.890
MDP0000146969
Malus domestica
MDP0000146969
I
0.900
MDP0000169485
Malus domestica
MDP0000169485
I
0.900
MDP0000852271
Malus domestica
MDP0000852271
I
0.875
cassava22173.valid.m1
Manihot esculenta
cassava22173.valid.m1
I
0.873
mg018130m
Mimulus guttatus
mg018130m
I
0.878
POPTR_0005s22180
Populus trichocarpa
POPTR_0005s22180
I
0.891
POPTR_0002s06210
Populus trichocarpa
POPTR_0002s06210
I
0.899
SapurV1A.0134s0420
Salix purpurea
SapurV1A.0134s0420
I
0.897
SapurV1A.0348s0040
Salix purpurea
SapurV1A.0348s0040
I
0.872
Solyc12g056790.1
Solanum lycopersicum
Solyc12g056790.1
I
0.881
Solyc04g072220.2
Solanum lycopersicum
Solyc04g072220.2
I
0.901
PGSC0003DMG400031149
Solanum tuberosum
PGSC0003DMG400031149
I
0.894
TCM_036587
Theobroma cacao
TCM_036587
I
0.877
VIT_18s0001g01820
Vitis vinifera
VIT_18s0001g01820
I
0.871