CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0050s0024
(
Capsella grandiflora
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cagra.0050s0024
T297345_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC043
M02370_2.00
Arabidopsis thaliana
NTTACGYWAN
NTWRCGTAAN
PBM
Weirauch et al.(2014)
pTH8161
0.970
1.000
NAC043
M07192_2.00
Arabidopsis thaliana
TRCKTVHDNHNYAMG
CKTRNDNHDBAMGYA
Dap-seq
OMalley et al.(2016)
NST1_colamp_a
0.970
1.000
NAC043
M07193_2.00
Arabidopsis thaliana
RCKTVHDNHNYAMGYWA
TWRCKTRNDNHDBAMGY
Dap-seq
OMalley et al.(2016)
NST1_col_v31
0.970
1.000
NAC066
M00978_2.00
Arabidopsis thaliana
NBNNHNBNNN
NNNVNDNNVN
PBM
Lindemose et al.(2014)
NST2
0.940
0.895
OS06G0131700
M02378_2.00
Oryza sativa
NNNNHMDNND
HNNHKDNNNN
PBM
Weirauch et al.(2014)
pTH8356
0.928
0.895
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.928
0.912
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN
NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.919
0.895
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0050s0024.1.p
NAC/NAM
17
144
PPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Capsella grandiflora
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NAC043
Arabidopsis thaliana
AT2G46770
D
0.970
Bo4g006990
Brassica oleracea
Bo4g006990
I
0.970
Bra004509
Brassica rapa
Bra004509
I
0.970
NST1
Arabidopsis lyrata
scaffold_403649.1
I
0.970
Bostr.25993s0090
Boechera stricta
Bostr.25993s0090
I
0.970
Carubv10023503m.g
Capsella rubella
Carubv10023503m.g
I
0.970
Thhalv10001506m.g
Eutrema salsugineum
Thhalv10001506m.g
I
0.970
Bo4g197330
Brassica oleracea
Bo4g197330
I
0.969
Bra040486
Brassica rapa
Bra040486
I
0.969
PRUPE_ppa020746mg
Prunus persica
PRUPE_ppa020746mg
I
0.959
Pm018292
Prunus mume
Pm018292
I
0.959
gene18636-v1.0-hybrid
Fragaria vesca
gene18636-v1.0-hybrid
I
0.959
MDP0000563165
Malus domestica
MDP0000563165
I
0.959
Bra003478
Brassica rapa
Bra003478
I
0.958
Bra007640
Brassica rapa
Bra007640
I
0.958
TCM_005047
Theobroma cacao
TCM_005047
I
0.958
Cla006806
Citrullus lanatus
Cla006806
I
0.958
27964.m000369
Ricinus communis
27964.m000369
I
0.958
Cucsa.120870
Cucumis sativus
Cucsa.120870
I
0.958
Bostr.13158s0196
Boechera stricta
Bostr.13158s0196
I
0.958
Gorai.007G112500
Gossypium raimondii
Gorai.007G112500
I
0.958
cassava33021.m1
Manihot esculenta
cassava33021.m1
I
0.957
Lus10002687.g
Linum usitatissimum
Lus10002687.g
I
0.956
Lus10030205.g
Linum usitatissimum
Lus10030205.g
I
0.956
NST2
Arabidopsis lyrata
scaffold_503455.1
I
0.955
Gorai.001G150800
Gossypium raimondii
Gorai.001G150800
I
0.955
GLYMA07G05660
Glycine max
GLYMA07G05660
I
0.954
GLYMA16G02200
Glycine max
GLYMA16G02200
I
0.954
MTR_8g024480
Medicago truncatula
MTR_8g024480
I
0.954
POPTR_0014s10060
Populus trichocarpa
POPTR_0014s10060
I
0.954
Ca_22426
Cicer arietinum
Ca_22426
I
0.954
Cagra.0483s0052
Capsella grandiflora
Cagra.0483s0052
I
0.954
Carubv10019223m.g
Capsella rubella
Carubv10019223m.g
I
0.954
SapurV1A.0162s0220
Salix purpurea
SapurV1A.0162s0220
I
0.954
LjSGA_027787.1
Lotus japonicus
LjSGA_027787.1
I
0.954
AMTR_s00113p00077540
Amborella trichopoda
AMTR_s00113p00077540
I
0.953
Ca_22425
Cicer arietinum
Ca_22425
I
0.953
POPTR_0002s17950
Populus trichocarpa
POPTR_0002s17950
I
0.951
Ciclev10024035m.g
Citrus clementina
Ciclev10024035m.g
I
0.950
orange1.1g015853m.g
Citrus sinensis
orange1.1g015853m.g
I
0.950
mgf022455m
Mimulus guttatus
mgf022455m
I
0.949
PK04961.1
Cannabis sativa
PK04961.1
I
0.949
ANAC012
Vitis vinifera
VIT_02s0025g02710
I
0.948
Cla011508
Citrullus lanatus
Cla011508
I
0.947
Cucsa.193460
Cucumis sativus
Cucsa.193460
I
0.947
GSMUA_Achr3G12230_001
Musa acuminata
GSMUA_Achr3G12230_001
I
0.946
Aquca_037_00272
Aquilegia coerulea
Aquca_037_00272
I
0.946
Bo6g079180
Brassica oleracea
Bo6g079180
I
0.944
GSMUA_Achr7G05980_001
Musa acuminata
GSMUA_Achr7G05980_001
I
0.943
GSMUA_Achr9G24450_001
Musa acuminata
GSMUA_Achr9G24450_001
I
0.943
VIT_15s0048g02660
Vitis vinifera
VIT_15s0048g02660
I
0.943
PDK_20s1408241g001
Phoenix dactylifera
PDK_20s1408241g001
I
0.941
NAC066
Arabidopsis thaliana
AT3G61910
D
0.940
GRMZM2G171395
Zea mays
GRMZM2G171395
I
0.939
Sb10g002120
Sorghum bicolor
Sb10g002120
I
0.939
Si006565m.g
Setaria italica
Si006565m.g
I
0.939
GSMUA_AchrUn_randomG21980_001
Musa acuminata
GSMUA_AchrUn_randomG21980_001
I
0.938
Gorai.008G130300
Gossypium raimondii
Gorai.008G130300
I
0.937
GRMZM2G069047
Zea mays
GRMZM2G069047
I
0.936
SapurV1A.0003s0530
Salix purpurea
SapurV1A.0003s0530
I
0.936
cassava32649.m1
Manihot esculenta
cassava32649.m1
I
0.935
OMERI08G01360
Oryza meridionalis
OMERI08G01360
I
0.934
F775_11081
Aegilops tauschii
F775_11081
I
0.933
GRMZM2G092465
Zea mays
GRMZM2G092465
I
0.933
MLOC_66924
Hordeum vulgare
MLOC_66924
I
0.933
Sb07g001550
Sorghum bicolor
Sb07g001550
I
0.933
Traes_7AL_B000BC0DD
Triticum aestivum
Traes_7AL_B000BC0DD
I
0.933
Traes_7DL_1AD9A3E8D
Triticum aestivum
Traes_7DL_1AD9A3E8D
I
0.933
Pavir.J20698
Panicum virgatum
Pavir.J20698
I
0.933
Pavir.J21162
Panicum virgatum
Pavir.J21162
I
0.933
Eucgr.D01671
Eucalyptus grandis
Eucgr.D01671
I
0.932
Lus10001664.g
Linum usitatissimum
Lus10001664.g
I
0.932
Lus10017340.g
Linum usitatissimum
Lus10017340.g
I
0.932
NAC012
Arabidopsis thaliana
AT1G32770
D
0.928
BGIOSGA022006
Oryza indica
BGIOSGA022006
I
0.928
BGIOSGA027883
Oryza indica
BGIOSGA027883
I
0.928
ANAC012
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002619
I
0.928
LPERR06G01790
Leersia perrieri
LPERR06G01790
I
0.928
OB06G11970
Oryza brachyantha
OB06G11970
I
0.928
OB08G11290
Oryza brachyantha
OB08G11290
I
0.928
OBART06G01950
Oryza barthii
OBART06G01950
I
0.928
OBART08G01110
Oryza barthii
OBART08G01110
I
0.928
OGLUM06G01950
Oryza glumaepatula
OGLUM06G01950
I
0.928
OGLUM08G01180
Oryza glumaepatula
OGLUM08G01180
I
0.928
OMERI06G01850
Oryza meridionalis
OMERI06G01850
I
0.928
ONIVA06G02290
Oryza nivara
ONIVA06G02290
I
0.928
ONIVA08G01130
Oryza nivara
ONIVA08G01130
I
0.928
OPUNC06G01800
Oryza punctata
OPUNC06G01800
I
0.928
OPUNC08G01110
Oryza punctata
OPUNC08G01110
I
0.928
ORGLA06G0019800
Oryza glaberrima
ORGLA06G0019800
I
0.928
ORGLA08G0004900
Oryza glaberrima
ORGLA08G0004900
I
0.928
ORUFI06G01950
Oryza rufipogon
ORUFI06G01950
I
0.928
ORUFI08G01170
Oryza rufipogon
ORUFI08G01170
I
0.928
OS06G0131700
Oryza sativa
OS06G0131700
D
0.928
OS08G0115800
Oryza sativa
OS08G0115800
I
0.928
PRUPE_ppa006801mg
Prunus persica
PRUPE_ppa006801mg
I
0.928
TCM_015621
Theobroma cacao
TCM_015621
I
0.928
Pm024260
Prunus mume
Pm024260
I
0.928
30068.m002591
Ricinus communis
30068.m002591
I
0.928
cassava42638.valid.m1
Manihot esculenta
cassava42638.valid.m1
I
0.928
Cagra.14513s0001
Capsella grandiflora
Cagra.14513s0001
I
0.928
Carubv10011900m.g
Capsella rubella
Carubv10011900m.g
I
0.928
Ciclev10021141m.g
Citrus clementina
Ciclev10021141m.g
I
0.928
gene01881-v1.0-hybrid
Fragaria vesca
gene01881-v1.0-hybrid
I
0.928
Gorai.004G129200
Gossypium raimondii
Gorai.004G129200
I
0.928
orange1.1g014260m.g
Citrus sinensis
orange1.1g014260m.g
I
0.928
Thhalv10009336m.g
Eutrema salsugineum
Thhalv10009336m.g
I
0.928
Bo5g049360
Brassica oleracea
Bo5g049360
I
0.927
Bostr.3359s0081
Boechera stricta
Bostr.3359s0081
I
0.927
LPERR08G01440
Leersia perrieri
LPERR08G01440
I
0.926
Bra023288
Brassica rapa
Bra023288
I
0.925
cassava45846.m1
Manihot esculenta
cassava45846.m1
I
0.925
Gorai.003G077700
Gossypium raimondii
Gorai.003G077700
I
0.925
Lus10008271.g
Linum usitatissimum
Lus10008271.g
I
0.925
Lus10033239.g
Linum usitatissimum
Lus10033239.g
I
0.925
Pavir.J07835
Panicum virgatum
Pavir.J07835
I
0.925
Bo5g086900
Brassica oleracea
Bo5g086900
I
0.921
Bra010183
Brassica rapa
Bra010183
I
0.921
POPTR_0011s15640
Populus trichocarpa
POPTR_0011s15640
I
0.921
Eucgr.E01053
Eucalyptus grandis
Eucgr.E01053
I
0.921
Gorai.006G205300
Gossypium raimondii
Gorai.006G205300
I
0.921
SapurV1A.0131s0060
Salix purpurea
SapurV1A.0131s0060
I
0.921
PK22182.1
Cannabis sativa
PK22182.1
I
0.921
POPTR_0001s45250
Populus trichocarpa
POPTR_0001s45250
I
0.920
Gorai.008G259700
Gossypium raimondii
Gorai.008G259700
I
0.920
SapurV1A.0941s0070
Salix purpurea
SapurV1A.0941s0070
I
0.920
SapurV1A.2717s0010
Salix purpurea
SapurV1A.2717s0010
I
0.920
MDP0000140229
Malus domestica
MDP0000140229
I
0.919
MDP0000762302
Malus domestica
MDP0000762302
D
0.919
BRADI3G13727
Brachypodium distachyon
BRADI3G13727
I
0.917
PGSC0003DMG400011268
Solanum tuberosum
PGSC0003DMG400011268
I
0.916
Solyc10g005010.2
Solanum lycopersicum
Solyc10g005010.2
I
0.916
evm.TU.supercontig_37.89
Carica papaya
evm.TU.supercontig_37.89
I
0.915
gene18635-v1.0-hybrid
Fragaria vesca
gene18635-v1.0-hybrid
I
0.913
GRMZM2G091490
Zea mays
GRMZM2G091490
I
0.909
GSMUA_Achr2G20020_001
Musa acuminata
GSMUA_Achr2G20020_001
I
0.901
GSMUA_Achr10G14400_001
Musa acuminata
GSMUA_Achr10G14400_001
I
0.897
Aquca_030_00252
Aquilegia coerulea
Aquca_030_00252
I
0.896
AMTR_s00068p00207380
Amborella trichopoda
AMTR_s00068p00207380
I
0.892
GRMZM2G041746
Zea mays
GRMZM2G041746
I
0.888
GRMZM2G104074
Zea mays
GRMZM2G104074
I
0.888
Sb10g020860
Sorghum bicolor
Sb10g020860
I
0.888
OB02G19660
Oryza brachyantha
OB02G19660
I
0.887
BRADI3G09520
Brachypodium distachyon
BRADI3G09520
I
0.886
F775_42361
Aegilops tauschii
F775_42361
I
0.886
LPERR02G09170
Leersia perrieri
LPERR02G09170
I
0.886
MLOC_17128
Hordeum vulgare
MLOC_17128
I
0.886
Traes_7AL_46F73E667
Triticum aestivum
Traes_7AL_46F73E667
I
0.886
Traes_7DL_AD6EAD1A61
Triticum aestivum
Traes_7DL_AD6EAD1A61
I
0.886
Traes_7DL_AD6EAD1A6
Triticum aestivum
Traes_7DL_AD6EAD1A6
I
0.886
TRIUR3_14210
Triticum urartu
TRIUR3_14210
I
0.886
BRADI1G38730
Brachypodium distachyon
BRADI1G38730
I
0.884
Sb04g009180
Sorghum bicolor
Sb04g009180
I
0.883
Si007822m.g
Setaria italica
Si007822m.g
I
0.883
Lus10032238.g
Linum usitatissimum
Lus10032238.g
I
0.883
Pavir.Da01009
Panicum virgatum
Pavir.Da01009
I
0.883
Pavir.J05053
Panicum virgatum
Pavir.J05053
I
0.883
Si017641m.g
Setaria italica
Si017641m.g
I
0.880
F775_21627
Aegilops tauschii
F775_21627
I
0.879
TRIUR3_14543
Triticum urartu
TRIUR3_14543
I
0.879
Lus10009939.g
Linum usitatissimum
Lus10009939.g
I
0.879
Pavir.Aa02770
Panicum virgatum
Pavir.Aa02770
I
0.879
Pavir.Ab01037
Panicum virgatum
Pavir.Ab01037
I
0.879
TRIUR3_27911
Triticum urartu
TRIUR3_27911
I
0.877
GLYMA19G44890
Glycine max
GLYMA19G44890
I
0.876
Lus10030143.g
Linum usitatissimum
Lus10030143.g
I
0.876
OPUNC02G09610
Oryza punctata
OPUNC02G09610
I
0.872