Cagra.0569s0030 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.0569s0030 T297359_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac096
M07237_2.00 		Arabidopsis thaliana
CTTSHNNNNBAMGHAAYC
GRTTDCKTVNNNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC096_colamp_a 		0.958 0.991
anac096
M07238_2.00 		Arabidopsis thaliana
TTNCTTSWNNHNYAMG
CKTRNDNNWSAAGNAA		 Dap-seq
OMalley et al.(2016)
ANAC096_col 		0.958 0.991
anac071
M07219_2.00 		Arabidopsis thaliana
CTTSHNNYHCAMGYW
WRCKTGDRNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC071_col_a 		0.941 0.812
anac071
M07220_2.00 		Arabidopsis thaliana
CTTSHNNNNSAMGYA
TRCKTSNNNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC071_colamp_a 		0.941 0.812
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0569s0030.1.p NAC/NAM 7 134

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
anac071 Arabidopsis thaliana AT4G17980 D 0.941
anac096 Arabidopsis thaliana AT5G46590 D 0.958
Pm023277 Prunus mume Pm023277 I 0.945
Eucgr.D02182 Eucalyptus grandis Eucgr.D02182 I 0.925
Ciclev10031966m.g Citrus clementina Ciclev10031966m.g I 0.948
Carubv10028284m.g Capsella rubella Carubv10028284m.g I 0.966
Carubv10007390m.g Capsella rubella Carubv10007390m.g I 0.937
Cagra.3356s0092 Capsella grandiflora Cagra.3356s0092 I 0.947
Bostr.4485s0006 Boechera stricta Bostr.4485s0006 I 0.939
Bostr.30275s0267 Boechera stricta Bostr.30275s0267 I 0.949
Cucsa.313350 Cucumis sativus Cucsa.313350 I 0.944
cassava22941.valid.m1 Manihot esculenta cassava22941.valid.m1 I 0.942
29827.m002555 Ricinus communis 29827.m002555 I 0.939
evm.TU.supercontig_90.52 Carica papaya evm.TU.supercontig_90.52 I 0.958
Cla016424 Citrullus lanatus Cla016424 I 0.943
Ca_12837 Cicer arietinum Ca_12837 I 0.949
Ca_02274 Cicer arietinum Ca_02274 I 0.933
VIT_02s0012g01040 Vitis vinifera VIT_02s0012g01040 I 0.946
TRIUR3_22131 Triticum urartu TRIUR3_22131 I 0.903
Traes_1BL_8925B27BC Triticum aestivum Traes_1BL_8925B27BC I 0.918
Traes_1AL_D6C49C3BC Triticum aestivum Traes_1AL_D6C49C3BC I 0.918
TCM_015749 Theobroma cacao TCM_015749 I 0.927
MDP0000936269 Malus domestica MDP0000936269 I 0.944
chr2.CM0021.650.nc Lotus japonicus chr2.CM0021.650.nc I 0.897
PK00339.1 Cannabis sativa PK00339.1 I 0.944
Thhalv10027064m.g Eutrema salsugineum Thhalv10027064m.g I 0.914
Thhalv10001200m.g Eutrema salsugineum Thhalv10001200m.g I 0.960
SapurV1A.0900s0060 Salix purpurea SapurV1A.0900s0060 I 0.932
SapurV1A.0846s0080 Salix purpurea SapurV1A.0846s0080 I 0.941
Pavir.Ib02435 Panicum virgatum Pavir.Ib02435 I 0.911
Pavir.Ia03491 Panicum virgatum Pavir.Ia03491 I 0.901
orange1.1g018835m.g Citrus sinensis orange1.1g018835m.g I 0.948
Eucgr.E00298 Eucalyptus grandis Eucgr.E00298 I 0.925
MDP0000119446 Malus domestica MDP0000119446 I 0.893
Lus10035373.g Linum usitatissimum Lus10035373.g I 0.944
Lus10030978.g Linum usitatissimum Lus10030978.g I 0.940
Gorai.008G227800 Gossypium raimondii Gorai.008G227800 I 0.936
Gorai.007G031300 Gossypium raimondii Gorai.007G031300 I 0.925
Gorai.004G186700 Gossypium raimondii Gorai.004G186700 I 0.938
Gorai.003G180600 Gossypium raimondii Gorai.003G180600 I 0.913
gene10722-v1.0-hybrid Fragaria vesca gene10722-v1.0-hybrid I 0.944
Solyc06g061080.2 Solanum lycopersicum Solyc06g061080.2 I 0.908
Bra025012 Brassica rapa Bra025012 I 0.960
LPERR10G15090 Leersia perrieri LPERR10G15090 I 0.931
GSMUA_Achr5G03360_001 Musa acuminata GSMUA_Achr5G03360_001 I 0.943
GSMUA_Achr11G17780_001 Musa acuminata GSMUA_Achr11G17780_001 I 0.898
GRMZM2G082709 Zea mays GRMZM2G082709 I 0.907
GLYMA17G16500 Glycine max GLYMA17G16500 I 0.950
GLYMA05G23840 Glycine max GLYMA05G23840 I 0.952
anac096 Arabidopsis lyrata fgenesh2_kg.8__135__AT5G46590.1 I 0.964
F775_28577 Aegilops tauschii F775_28577 I 0.918
BRADI3G33957 Brachypodium distachyon BRADI3G33957 I 0.925
MLOC_58950 Hordeum vulgare MLOC_58950 I 0.918
Bra022046 Brassica rapa Bra022046 I 0.960
Bra013272 Brassica rapa Bra013272 I 0.926
Bra012626 Brassica rapa Bra012626 I 0.942
Bo7g105630 Brassica oleracea Bo7g105630 I 0.937
Bo7g075540 Brassica oleracea Bo7g075540 I 0.960
Bo2g130240 Brassica oleracea Bo2g130240 I 0.953
Bo1g019130 Brassica oleracea Bo1g019130 I 0.926
BGIOSGA033482 Oryza indica BGIOSGA033482 I 0.931
AMTR_s00149p00068500 Amborella trichopoda AMTR_s00149p00068500 I 0.896
OPUNC10G17630 Oryza punctata OPUNC10G17630 I 0.931
anac071 Arabidopsis lyrata Al_scaffold_0007_2395 I 0.949
Si036301m.g Setaria italica Si036301m.g I 0.901
Sb01g028450 Sorghum bicolor Sb01g028450 I 0.901
PRUPE_ppa007828mg Prunus persica PRUPE_ppa007828mg I 0.945
POPTR_0003s08830 Populus trichocarpa POPTR_0003s08830 I 0.942
POPTR_0001s02710 Populus trichocarpa POPTR_0001s02710 I 0.932
PGSC0003DMG400017505 Solanum tuberosum PGSC0003DMG400017505 I 0.940
ORUFI10G20470 Oryza rufipogon ORUFI10G20470 I 0.931
ORGLA10G0144100 Oryza glaberrima ORGLA10G0144100 I 0.931
Solyc08g077110.2 Solanum lycopersicum Solyc08g077110.2 I 0.939
ONIVA10G21790 Oryza nivara ONIVA10G21790 I 0.931
OMERI07G08100 Oryza meridionalis OMERI07G08100 I 0.931
OLONG_018722 Oryza longistaminata OLONG_018722 I 0.931
OGLUM10G19330 Oryza glumaepatula OGLUM10G19330 I 0.931
OBART10G19230 Oryza barthii OBART10G19230 I 0.931
OB10G26350 Oryza brachyantha OB10G26350 I 0.929
MTR_5g014300 Medicago truncatula MTR_5g014300 I 0.947
MTR_4g098630 Medicago truncatula MTR_4g098630 I 0.923