CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10014350m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10014350m.g
T297514_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10014350m
NAC/NAM
7
135
LPGFRFHPTEEELLDFYLKNMVYGKRSSVEVISFLNIYRHDPWDLPGLSRILGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLSEPKRVIGLKKTLVFYRGRAPGGSKTDWVMNEFRM
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29797.m000353
Ricinus communis
29797.m000353
N
0.930
Aquca_015_00469
Aquilegia coerulea
Aquca_015_00469
N
0.897
anac036
Arabidopsis thaliana
AT2G17040
N
0.955
Bo3g092020
Brassica oleracea
Bo3g092020
N
0.941
Bo7g015050
Brassica oleracea
Bo7g015050
N
0.944
Bo9g024360
Brassica oleracea
Bo9g024360
N
0.873
Bostr.18351s0165
Boechera stricta
Bostr.18351s0165
N
0.963
Bra002018
Brassica rapa
Bra002018
N
0.929
Bra013034
Brassica rapa
Bra013034
N
0.941
Bra037283
Brassica rapa
Bra037283
N
0.876
Cagra.0805s0005
Capsella grandiflora
Cagra.0805s0005
N
0.971
cassava13355.valid.m1
Manihot esculenta
cassava13355.valid.m1
N
0.908
cassava30341.valid.m1
Manihot esculenta
cassava30341.valid.m1
N
0.905
Ca_11128
Cicer arietinum
Ca_11128
N
0.874
chr3.CM0460.350.nd
Lotus japonicus
chr3.CM0460.350.nd
N
0.889
Ciclev10029007m.g
Citrus clementina
Ciclev10029007m.g
N
0.906
Eucgr.I01494
Eucalyptus grandis
Eucgr.I01494
N
0.920
evm.TU.supercontig_320.2
Carica papaya
evm.TU.supercontig_320.2
N
0.922
anac036
Arabidopsis lyrata
fgenesh2_kg.3__3291__AT2G17040.1
N
0.955
gene17203-v1.0-hybrid
Fragaria vesca
gene17203-v1.0-hybrid
N
0.917
GLYMA11G10230
Glycine max
GLYMA11G10230
N
0.889
GLYMA12G02540
Glycine max
GLYMA12G02540
N
0.889
Gorai.005G257800
Gossypium raimondii
Gorai.005G257800
N
0.900
Gorai.008G038800
Gossypium raimondii
Gorai.008G038800
N
0.916
Lus10003333.g
Linum usitatissimum
Lus10003333.g
N
0.919
Lus10022636.g
Linum usitatissimum
Lus10022636.g
N
0.914
Lus10023966.g
Linum usitatissimum
Lus10023966.g
N
0.902
Lus10025118.g
Linum usitatissimum
Lus10025118.g
N
0.890
MDP0000480581
Malus domestica
MDP0000480581
N
0.929
MDP0000868556
Malus domestica
MDP0000868556
N
0.929
mgf013168m
Mimulus guttatus
mgf013168m
N
0.875
MTR_4g075980
Medicago truncatula
MTR_4g075980
N
0.888
orange1.1g023427m.g
Citrus sinensis
orange1.1g023427m.g
N
0.906
Pm020961
Prunus mume
Pm020961
N
0.918
POPTR_0004s18860
Populus trichocarpa
POPTR_0004s18860
N
0.907
POPTR_0009s14370
Populus trichocarpa
POPTR_0009s14370
N
0.900
PRUPE_ppa009455mg
Prunus persica
PRUPE_ppa009455mg
N
0.918
SapurV1A.0080s0480
Salix purpurea
SapurV1A.0080s0480
N
0.904
SapurV1A.0218s0020
Salix purpurea
SapurV1A.0218s0020
N
0.897
TCM_006499
Theobroma cacao
TCM_006499
N
0.936
Thhalv10022800m.g
Eutrema salsugineum
Thhalv10022800m.g
N
0.963
VIT_04s0008g00150
Vitis vinifera
VIT_04s0008g00150
N
0.878