CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_42.145
(
Carica papaya
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
evm.TU.supercontig_42.145
T297875_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac103
M07243_2.00
Arabidopsis thaliana
TDVCTTGNDNHNCAAGTTWYY
RRWAACTTGNDNHNCAAGBHA
Dap-seq
OMalley et al.(2016)
ANAC103_col_a
0.876
0.750
anac103
M07244_2.00
Arabidopsis thaliana
TTGNDNHNCAAGYTWY
RWARCTTGNDNHNCAA
Dap-seq
OMalley et al.(2016)
ANAC103_colamp_a
0.876
0.750
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_42.145
NAC/NAM
7
133
APGFRFHPTDVELVKYYLTRKVLGKKLRVEAIAEVDIYKFAPWDLPDKSLLRTGDLKWYYFCPREKKYGSGNRLKRATEFGYWKTTGKDRPVHYEEKLTGMIKTLVFHQGKAPVGKRTDWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Carica papaya
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30136.m001048
Ricinus communis
30136.m001048
N
0.922
Aquca_022_00282
Aquilegia coerulea
Aquca_022_00282
I
0.920
NAC082
Arabidopsis thaliana
AT5G09330
N
0.884
anac103
Arabidopsis thaliana
AT5G64060
D
0.876
Bo3g101690
Brassica oleracea
Bo3g101690
I
0.873
Bra024263
Brassica rapa
Bra024263
I
0.873
Ciclev10001200m.g
Citrus clementina
Ciclev10001200m.g
N
0.911
VNI1
Arabidopsis lyrata
fgenesh2_kg.6__879__AT5G09330.2
N
0.889
GSMUA_Achr11G09000_001
Musa acuminata
GSMUA_Achr11G09000_001
N
0.910
Lus10020896.g
Linum usitatissimum
Lus10020896.g
N
0.884
mgf025137m
Mimulus guttatus
mgf025137m
N
0.875
orange1.1g036240m.g
Citrus sinensis
orange1.1g036240m.g
N
0.911
PDK_20s1369501g001
Phoenix dactylifera
PDK_20s1369501g001
N
0.904
Solyc11g005920.1
Solanum lycopersicum
Solyc11g005920.1
N
0.881
TCM_028313
Theobroma cacao
TCM_028313
N
0.878
Thhalv10004501m.g
Eutrema salsugineum
Thhalv10004501m.g
I
0.877
Thhalv10013785m.g
Eutrema salsugineum
Thhalv10013785m.g
N
0.898