CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene31175-v1.0-hybrid
(
Fragaria vesca
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
gene31175-v1.0-hybrid
T298021_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
0.971
0.930
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
0.971
0.930
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.923
0.825
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.923
0.825
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN
NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.914
0.798
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.900
0.798
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna31175.1-v1.0-hybrid
NAC/NAM
135
262
PPGFRFHPTDEELLHYYLKKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Fragaria vesca
TFs
226 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29382.m000084
Ricinus communis
29382.m000084
I
0.977
29725.m000235
Ricinus communis
29725.m000235
I
0.934
30068.m002591
Ricinus communis
30068.m002591
I
0.902
AMTR_s00068p00207380
Amborella trichopoda
AMTR_s00068p00207380
I
0.894
AMTR_s00099p00131560
Amborella trichopoda
AMTR_s00099p00131560
I
0.968
ANAC012
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002619
I
0.900
ANAC012
Vitis vinifera
VIT_02s0025g02710
I
0.871
ANAC015
Arabidopsis lyrata
fgenesh2_kg.1__3458__AT1G33280.1
I
0.965
ANAC070
Arabidopsis lyrata
Al_scaffold_0006_3164
I
0.971
Aquca_014_00032
Aquilegia coerulea
Aquca_014_00032
I
0.972
Aquca_030_00252
Aquilegia coerulea
Aquca_030_00252
I
0.909
Aquca_037_00272
Aquilegia coerulea
Aquca_037_00272
I
0.882
BGIOSGA007898
Oryza indica
BGIOSGA007898
I
0.904
BGIOSGA015018
Oryza indica
BGIOSGA015018
I
0.968
BGIOSGA021116
Oryza indica
BGIOSGA021116
I
0.900
BGIOSGA034998
Oryza indica
BGIOSGA034998
I
0.968
Bo2g095440
Brassica oleracea
Bo2g095440
I
0.920
Bo5g049360
Brassica oleracea
Bo5g049360
I
0.899
Bo6g080930
Brassica oleracea
Bo6g080930
I
0.923
Bo6g123980
Brassica oleracea
Bo6g123980
I
0.922
Bo9g088300
Brassica oleracea
Bo9g088300
I
0.971
Bostr.20129s0396
Boechera stricta
Bostr.20129s0396
I
0.923
Bostr.25463s0283
Boechera stricta
Bostr.25463s0283
I
0.968
Bostr.3359s0042
Boechera stricta
Bostr.3359s0042
I
0.965
Bostr.3359s0081
Boechera stricta
Bostr.3359s0081
I
0.899
Bra000709
Brassica rapa
Bra000709
I
0.967
Bra003602
Brassica rapa
Bra003602
I
0.929
Bra008423
Brassica rapa
Bra008423
I
0.914
Bra023288
Brassica rapa
Bra023288
I
0.896
Bra035127
Brassica rapa
Bra035127
I
0.922
Bra037914
Brassica rapa
Bra037914
I
0.971
BRADI1G38730
Brachypodium distachyon
BRADI1G38730
I
0.914
BRADI3G09520
Brachypodium distachyon
BRADI3G09520
I
0.913
BRADI5G11247
Brachypodium distachyon
BRADI5G11247
I
0.967
BRN1
Arabidopsis thaliana
AT1G33280
I
0.965
BRN2
Arabidopsis thaliana
AT4G10350
D
0.971
Cagra.12686s0005
Capsella grandiflora
Cagra.12686s0005
I
0.968
Cagra.14513s0001
Capsella grandiflora
Cagra.14513s0001
I
0.900
Cagra.1725s0032
Capsella grandiflora
Cagra.1725s0032
I
0.923
Cagra.6133s0030
Capsella grandiflora
Cagra.6133s0030
I
0.966
Carubv10003879m.g
Capsella rubella
Carubv10003879m.g
I
0.968
Carubv10010920m.g
Capsella rubella
Carubv10010920m.g
I
0.966
Carubv10011900m.g
Capsella rubella
Carubv10011900m.g
I
0.900
Carubv10020504m.g
Capsella rubella
Carubv10020504m.g
I
0.923
cassava32649.m1
Manihot esculenta
cassava32649.m1
I
0.891
cassava32687.m1
Manihot esculenta
cassava32687.m1
I
0.931
cassava39971.m1
Manihot esculenta
cassava39971.m1
I
0.921
cassava42638.valid.m1
Manihot esculenta
cassava42638.valid.m1
I
0.902
cassava45846.m1
Manihot esculenta
cassava45846.m1
I
0.897
cassava4621.m1
Manihot esculenta
cassava4621.m1
I
0.964
Ca_01981
Cicer arietinum
Ca_01981
I
0.871
Ca_13929
Cicer arietinum
Ca_13929
I
0.934
Ca_15792
Cicer arietinum
Ca_15792
I
0.973
Ciclev10006623m.g
Citrus clementina
Ciclev10006623m.g
I
0.910
Ciclev10021141m.g
Citrus clementina
Ciclev10021141m.g
I
0.902
Ciclev10024588m.g
Citrus clementina
Ciclev10024588m.g
I
0.977
Cla005561
Citrullus lanatus
Cla005561
I
0.926
Cla011508
Citrullus lanatus
Cla011508
I
0.890
Cla012576
Citrullus lanatus
Cla012576
I
0.974
Cucsa.193460
Cucumis sativus
Cucsa.193460
I
0.890
Cucsa.237820
Cucumis sativus
Cucsa.237820
I
0.974
Cucsa.240210
Cucumis sativus
Cucsa.240210
I
0.914
Eucgr.E01053
Eucalyptus grandis
Eucgr.E01053
I
0.910
Eucgr.F04097
Eucalyptus grandis
Eucgr.F04097
I
0.976
evm.TU.supercontig_118.26
Carica papaya
evm.TU.supercontig_118.26
I
0.911
evm.TU.supercontig_37.89
Carica papaya
evm.TU.supercontig_37.89
I
0.906
F775_11081
Aegilops tauschii
F775_11081
I
0.883
F775_23174
Aegilops tauschii
F775_23174
I
0.967
F775_42361
Aegilops tauschii
F775_42361
I
0.914
gene01881-v1.0-hybrid
Fragaria vesca
gene01881-v1.0-hybrid
I
0.902
gene19898-v1.0-hybrid
Fragaria vesca
gene19898-v1.0-hybrid
I
0.934
GLYMA01G37310
Glycine max
GLYMA01G37310
I
0.871
GLYMA08G17140
Glycine max
GLYMA08G17140
I
0.931
GLYMA09G36820
Glycine max
GLYMA09G36820
I
0.974
GLYMA11G07990
Glycine max
GLYMA11G07990
I
0.871
GLYMA12G00540
Glycine max
GLYMA12G00540
I
0.970
GLYMA15G42050
Glycine max
GLYMA15G42050
I
0.927
Gorai.003G077700
Gossypium raimondii
Gorai.003G077700
I
0.897
Gorai.004G129200
Gossypium raimondii
Gorai.004G129200
I
0.902
Gorai.004G267300
Gossypium raimondii
Gorai.004G267300
I
0.977
Gorai.004G268500
Gossypium raimondii
Gorai.004G268500
I
0.933
Gorai.006G205300
Gossypium raimondii
Gorai.006G205300
I
0.888
Gorai.007G048000
Gossypium raimondii
Gorai.007G048000
I
0.881
Gorai.008G130300
Gossypium raimondii
Gorai.008G130300
I
0.892
Gorai.008G259700
Gossypium raimondii
Gorai.008G259700
I
0.918
GRMZM2G041746
Zea mays
GRMZM2G041746
I
0.918
GRMZM2G069047
Zea mays
GRMZM2G069047
I
0.888
GRMZM2G092465
Zea mays
GRMZM2G092465
I
0.890
GRMZM2G099144
Zea mays
GRMZM2G099144
I
0.968
GRMZM2G104074
Zea mays
GRMZM2G104074
I
0.918
GRMZM2G155816
Zea mays
GRMZM2G155816
I
0.908
GRMZM2G171395
Zea mays
GRMZM2G171395
I
0.872
GRMZM2G435824
Zea mays
GRMZM2G435824
I
0.965
GSMUA_Achr10G14400_001
Musa acuminata
GSMUA_Achr10G14400_001
I
0.904
GSMUA_Achr2G05640_001
Musa acuminata
GSMUA_Achr2G05640_001
I
0.937
GSMUA_Achr2G20020_001
Musa acuminata
GSMUA_Achr2G20020_001
I
0.912
GSMUA_Achr3G12230_001
Musa acuminata
GSMUA_Achr3G12230_001
I
0.877
GSMUA_Achr6G28890_001
Musa acuminata
GSMUA_Achr6G28890_001
I
0.964
GSMUA_Achr9G24450_001
Musa acuminata
GSMUA_Achr9G24450_001
I
0.876
LjSGA_059487.1
Lotus japonicus
LjSGA_059487.1
I
0.931
LPERR02G09170
Leersia perrieri
LPERR02G09170
I
0.912
LPERR06G14120
Leersia perrieri
LPERR06G14120
I
0.900
Lus10001664.g
Linum usitatissimum
Lus10001664.g
I
0.899
Lus10008271.g
Linum usitatissimum
Lus10008271.g
I
0.899
Lus10009939.g
Linum usitatissimum
Lus10009939.g
I
0.912
Lus10013782.g
Linum usitatissimum
Lus10013782.g
I
0.977
Lus10017340.g
Linum usitatissimum
Lus10017340.g
I
0.899
Lus10030143.g
Linum usitatissimum
Lus10030143.g
I
0.914
Lus10033239.g
Linum usitatissimum
Lus10033239.g
I
0.899
Lus10039153.g
Linum usitatissimum
Lus10039153.g
I
0.977
MDP0000140229
Malus domestica
MDP0000140229
I
0.914
MDP0000257674
Malus domestica
MDP0000257674
I
0.975
MDP0000460430
Malus domestica
MDP0000460430
I
0.873
MDP0000501518
Malus domestica
MDP0000501518
I
0.928
MDP0000558493
Malus domestica
MDP0000558493
I
0.977
MDP0000652584
Malus domestica
MDP0000652584
I
0.928
MDP0000762302
Malus domestica
MDP0000762302
D
0.914
mg017416m
Mimulus guttatus
mg017416m
I
0.922
mgf017656m
Mimulus guttatus
mgf017656m
I
0.960
mgf022455m
Mimulus guttatus
mgf022455m
I
0.872
mgf025569m
Mimulus guttatus
mgf025569m
I
0.902
MLOC_17128
Hordeum vulgare
MLOC_17128
I
0.914
MLOC_19175
Hordeum vulgare
MLOC_19175
I
0.967
MLOC_66924
Hordeum vulgare
MLOC_66924
I
0.883
MTR_2g062730
Medicago truncatula
MTR_2g062730
I
0.931
MTR_4g035590
Medicago truncatula
MTR_4g035590
I
0.973
NAC012
Arabidopsis thaliana
AT1G32770
D
0.900
OB02G19660
Oryza brachyantha
OB02G19660
I
0.913
OB04G21050
Oryza brachyantha
OB04G21050
I
0.969
OB06G24850
Oryza brachyantha
OB06G24850
I
0.900
OBART02G10820
Oryza barthii
OBART02G10820
I
0.904
OBART04G13830
Oryza barthii
OBART04G13830
I
0.968
OBART06G17120
Oryza barthii
OBART06G17120
I
0.900
OGLUM02G10770
Oryza glumaepatula
OGLUM02G10770
I
0.904
OGLUM04G13590
Oryza glumaepatula
OGLUM04G13590
I
0.969
OGLUM06G18230
Oryza glumaepatula
OGLUM06G18230
I
0.900
OLONG_007664
Oryza longistaminata
OLONG_007664
I
0.904
OLONG_020428
Oryza longistaminata
OLONG_020428
I
0.968
OMERI06G17980
Oryza meridionalis
OMERI06G17980
I
0.900
ONIVA02G12010
Oryza nivara
ONIVA02G12010
I
0.904
ONIVA04G12040
Oryza nivara
ONIVA04G12040
I
0.968
ONIVA06G20460
Oryza nivara
ONIVA06G20460
I
0.900
OPUNC02G09610
Oryza punctata
OPUNC02G09610
I
0.909
OPUNC06G15490
Oryza punctata
OPUNC06G15490
I
0.900
orange1.1g014260m.g
Citrus sinensis
orange1.1g014260m.g
I
0.902
orange1.1g042376m.g
Citrus sinensis
orange1.1g042376m.g
I
0.977
orange1.1g046523m.g
Citrus sinensis
orange1.1g046523m.g
I
0.910
ORGLA02G0097800
Oryza glaberrima
ORGLA02G0097800
I
0.904
ORUFI02G10740
Oryza rufipogon
ORUFI02G10740
I
0.903
ORUFI04G15090
Oryza rufipogon
ORUFI04G15090
I
0.967
ORUFI06G18140
Oryza rufipogon
ORUFI06G18140
I
0.900
OS02G0252200
Oryza sativa
OS02G0252200
I
0.903
OS06G0530400
Oryza sativa
OS06G0530400
I
0.900
Pavir.Aa02770
Panicum virgatum
Pavir.Aa02770
I
0.917
Pavir.Ab01037
Panicum virgatum
Pavir.Ab01037
I
0.917
Pavir.Da01009
Panicum virgatum
Pavir.Da01009
I
0.914
Pavir.Gb01599
Panicum virgatum
Pavir.Gb01599
I
0.969
Pavir.J05053
Panicum virgatum
Pavir.J05053
I
0.914
Pavir.J07268
Panicum virgatum
Pavir.J07268
I
0.969
Pavir.J20698
Panicum virgatum
Pavir.J20698
I
0.890
Pavir.J21162
Panicum virgatum
Pavir.J21162
I
0.890
PDK_20s1408241g001
Phoenix dactylifera
PDK_20s1408241g001
I
0.874
PGSC0003DMG400009665
Solanum tuberosum
PGSC0003DMG400009665
I
0.928
PGSC0003DMG400011268
Solanum tuberosum
PGSC0003DMG400011268
I
0.884
PK10271.1
Cannabis sativa
PK10271.1
I
0.934
PK22182.1
Cannabis sativa
PK22182.1
I
0.912
Pm010886
Prunus mume
Pm010886
I
0.934
Pm022820
Prunus mume
Pm022820
I
0.977
Pm024260
Prunus mume
Pm024260
I
0.904
POPTR_0001s45250
Populus trichocarpa
POPTR_0001s45250
I
0.910
POPTR_0002s17950
Populus trichocarpa
POPTR_0002s17950
I
0.875
POPTR_0008s07950
Populus trichocarpa
POPTR_0008s07950
I
0.921
POPTR_0010s18420
Populus trichocarpa
POPTR_0010s18420
I
0.921
POPTR_0011s15640
Populus trichocarpa
POPTR_0011s15640
I
0.910
POPTR_0013s09280
Populus trichocarpa
POPTR_0013s09280
I
0.964
POPTR_0019s09400
Populus trichocarpa
POPTR_0019s09400
I
0.949
PRUPE_ppa006801mg
Prunus persica
PRUPE_ppa006801mg
I
0.904
PRUPE_ppa025341mg
Prunus persica
PRUPE_ppa025341mg
I
0.934
PRUPE_ppa026376mg
Prunus persica
PRUPE_ppa026376mg
I
0.977
SapurV1A.0093s0460
Salix purpurea
SapurV1A.0093s0460
I
0.921
SapurV1A.0131s0060
Salix purpurea
SapurV1A.0131s0060
I
0.910
SapurV1A.0162s0220
Salix purpurea
SapurV1A.0162s0220
I
0.873
SapurV1A.0164s0070
Salix purpurea
SapurV1A.0164s0070
I
0.921
SapurV1A.0907s0070
Salix purpurea
SapurV1A.0907s0070
I
0.946
SapurV1A.0941s0070
Salix purpurea
SapurV1A.0941s0070
I
0.910
SapurV1A.1219s0030
Salix purpurea
SapurV1A.1219s0030
I
0.963
SapurV1A.2717s0010
Salix purpurea
SapurV1A.2717s0010
I
0.910
Sb04g009180
Sorghum bicolor
Sb04g009180
I
0.914
Sb06g017720
Sorghum bicolor
Sb06g017720
I
0.969
Sb07g001550
Sorghum bicolor
Sb07g001550
I
0.890
Sb10g002120
Sorghum bicolor
Sb10g002120
I
0.872
Sb10g020850
Sorghum bicolor
Sb10g020850
I
0.873
Sb10g020860
Sorghum bicolor
Sb10g020860
I
0.918
SELMODRAFT_402243
Selaginella moellendorffii
SELMODRAFT_402243
I
0.874
SELMODRAFT_408624
Selaginella moellendorffii
SELMODRAFT_408624
I
0.874
SELMODRAFT_451784
Selaginella moellendorffii
SELMODRAFT_451784
I
0.884
SELMODRAFT_57388
Selaginella moellendorffii
SELMODRAFT_57388
I
0.884
Si006565m.g
Setaria italica
Si006565m.g
I
0.872
Si007822m.g
Setaria italica
Si007822m.g
I
0.914
Si012319m.g
Setaria italica
Si012319m.g
I
0.969
Si017641m.g
Setaria italica
Si017641m.g
I
0.917
SMB
Arabidopsis thaliana
AT1G79580
D
0.923
SMB
Arabidopsis lyrata
scaffold_202942.1
I
0.923
SMB
Vitis vinifera
VIT_19s0085g01210
I
0.930
Solyc06g063430.1
Solanum lycopersicum
Solyc06g063430.1
I
0.963
Solyc10g005010.2
Solanum lycopersicum
Solyc10g005010.2
I
0.884
Solyc12g017400.1
Solanum lycopersicum
Solyc12g017400.1
I
0.928
TCM_015621
Theobroma cacao
TCM_015621
I
0.902
TCM_033728
Theobroma cacao
TCM_033728
I
0.933
TCM_036034
Theobroma cacao
TCM_036034
I
0.973
Thhalv10008226m.g
Eutrema salsugineum
Thhalv10008226m.g
I
0.966
Thhalv10009336m.g
Eutrema salsugineum
Thhalv10009336m.g
I
0.900
Thhalv10019534m.g
Eutrema salsugineum
Thhalv10019534m.g
I
0.923
Thhalv10029403m.g
Eutrema salsugineum
Thhalv10029403m.g
I
0.971
Traes_2AL_F0B17F0EA
Triticum aestivum
Traes_2AL_F0B17F0EA
I
0.967
Traes_2BL_209C14A8F
Triticum aestivum
Traes_2BL_209C14A8F
I
0.967
Traes_2DL_70F83D4B9
Triticum aestivum
Traes_2DL_70F83D4B9
I
0.967
Traes_7AL_46F73E667
Triticum aestivum
Traes_7AL_46F73E667
I
0.914
Traes_7AL_B000BC0DD
Triticum aestivum
Traes_7AL_B000BC0DD
I
0.883
Traes_7DL_1AD9A3E8D
Triticum aestivum
Traes_7DL_1AD9A3E8D
I
0.883
Traes_7DL_AD6EAD1A6
Triticum aestivum
Traes_7DL_AD6EAD1A6
I
0.914
Traes_7DL_AD6EAD1A61
Triticum aestivum
Traes_7DL_AD6EAD1A61
I
0.914
TRIUR3_14210
Triticum urartu
TRIUR3_14210
I
0.914
TRIUR3_28259
Triticum urartu
TRIUR3_28259
I
0.963
VIT_15s0048g02660
Vitis vinifera
VIT_15s0048g02660
I
0.882
VIT_18s0089g01120
Vitis vinifera
VIT_18s0089g01120
I
0.976