Pavir.Ea00010 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ea00010 T298815_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.904 0.626
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.904 0.626
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.904 0.626
NAC48
M11084_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC6_01 		0.893 0.609
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00010.1.p NAC/NAM 24 151

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si004195m.g Setaria italica Si004195m.g I 0.992
Sb03g000330 Sorghum bicolor Sb03g000330 I 0.989
LPERR01G08530 Leersia perrieri LPERR01G08530 N 0.988
F775_23543 Aegilops tauschii F775_23543 I 0.987
TRAES3BF100600040CFD_g Triticum aestivum TRAES3BF100600040CFD_g I 0.987
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I 0.978
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.970
TCM_029796 Theobroma cacao TCM_029796 I 0.956
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.941
Si036303m.g Setaria italica Si036303m.g I 0.938
mgf004020m Mimulus guttatus mgf004020m I 0.936
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I 0.934
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.930
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.928
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I 0.924
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I 0.924
cassava4505.m1 Manihot esculenta cassava4505.m1 I 0.923
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I 0.922
Solyc04g009440.2 Solanum lycopersicum Solyc04g009440.2 I 0.921
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.921
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.920
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I 0.920
GRMZM2G162739 Zea mays GRMZM2G162739 I 0.914
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.914
GRMZM2G079632 Zea mays GRMZM2G079632 I 0.913
Sb02g006680 Sorghum bicolor Sb02g006680 I 0.913
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.913
TCM_035160 Theobroma cacao TCM_035160 I 0.912
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.912
NAC089 Arabidopsis thaliana AT5G22290 N 0.911
BGIOSGA018048 Oryza indica BGIOSGA018048 I 0.911
OBART05G16540 Oryza barthii OBART05G16540 I 0.911
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I 0.911
ONIVA05G17220 Oryza nivara ONIVA05G17220 I 0.911
OPUNC05G14600 Oryza punctata OPUNC05G14600 I 0.911
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I 0.911
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I 0.911
OS05G0415400 Oryza sativa OS05G0415400 I 0.911
anac089 Arabidopsis lyrata scaffold_602275.1 N 0.911
Si022714m.g Setaria italica Si022714m.g I 0.911
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I 0.911
Bostr.26527s0049 Boechera stricta Bostr.26527s0049 N 0.911
Cagra.0846s0004 Capsella grandiflora Cagra.0846s0004 N 0.911
Carubv10001357m.g Capsella rubella Carubv10001357m.g N 0.911
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I 0.910
anac032 Vitis vinifera VIT_18s0001g02300 I 0.909
Lus10015389.g Linum usitatissimum Lus10015389.g I 0.908
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.907
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.905
NAC002 Arabidopsis thaliana AT1G01720 D 0.904
Bo5g001100 Brassica oleracea Bo5g001100 I 0.904
Bra033239 Brassica rapa Bra033239 I 0.904
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.904
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.904
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.904
GLYMA05G32850 Glycine max GLYMA05G32850 I 0.903
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.903
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.902
Pavir.Ba03301 Panicum virgatum Pavir.Ba03301 I 0.902
PK26157.1 Cannabis sativa PK26157.1 I 0.902
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I 0.901
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.901
Sb08g022560 Sorghum bicolor Sb08g022560 I 0.900
Si030752m.g Setaria italica Si030752m.g I 0.899
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.898
Pavir.Bb00806 Panicum virgatum Pavir.Bb00806 I 0.897
LPERR05G13140 Leersia perrieri LPERR05G13140 I 0.896
LPERR05G13490 Leersia perrieri LPERR05G13490 I 0.896
BGIOSGA019897 Oryza indica BGIOSGA019897 I 0.895
MTR_8g094580 Medicago truncatula MTR_8g094580 I 0.895
OGLUM05G17980 Oryza glumaepatula OGLUM05G17980 I 0.895
ONIVA05G17670 Oryza nivara ONIVA05G17670 I 0.895
ORGLA05G0146600 Oryza glaberrima ORGLA05G0146600 I 0.895
BRADI2G57100 Brachypodium distachyon BRADI2G57100 I 0.894
GSMUA_Achr6G18720_001 Musa acuminata GSMUA_Achr6G18720_001 I 0.894
OMERI05G14410 Oryza meridionalis OMERI05G14410 I 0.894
BGIOSGA000374 Oryza indica BGIOSGA000374 I 0.893
LPERR01G34090 Leersia perrieri LPERR01G34090 I 0.893
OB01G48340 Oryza brachyantha OB01G48340 I 0.893
OB05G24820 Oryza brachyantha OB05G24820 I 0.893
OBART01G39590 Oryza barthii OBART01G39590 I 0.893
OGLUM01G43820 Oryza glumaepatula OGLUM01G43820 I 0.893
OMERI01G36460 Oryza meridionalis OMERI01G36460 I 0.893
ONIVA01G44460 Oryza nivara ONIVA01G44460 I 0.893
OPUNC01G38300 Oryza punctata OPUNC01G38300 I 0.893
ORGLA01G0334900 Oryza glaberrima ORGLA01G0334900 I 0.893
ORUFI01G42940 Oryza rufipogon ORUFI01G42940 I 0.893
NAC48 Oryza sativa OS01G0884300 D 0.893
PGSC0003DMG400005892 Solanum tuberosum PGSC0003DMG400005892 I 0.893
VIT_06s0004g00020 Vitis vinifera VIT_06s0004g00020 I 0.893
Sb03g041920 Sorghum bicolor Sb03g041920 I 0.892
GRMZM2G014653 Zea mays GRMZM2G014653 I 0.891
Si002413m.g Setaria italica Si002413m.g I 0.891
LPERR07G06440 Leersia perrieri LPERR07G06440 I 0.890
F775_28813 Aegilops tauschii F775_28813 I 0.889
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.889
MLOC_59162 Hordeum vulgare MLOC_59162 I 0.889
POPTR_0005s07060 Populus trichocarpa POPTR_0005s07060 I 0.889
TRAES3BF002300010CFD_g Triticum aestivum TRAES3BF002300010CFD_g I 0.889
TRIUR3_14109 Triticum urartu TRIUR3_14109 I 0.889
SapurV1A.0311s0230 Salix purpurea SapurV1A.0311s0230 I 0.889
BRADI2G03467 Brachypodium distachyon BRADI2G03467 I 0.887
POPTR_0007s04780 Populus trichocarpa POPTR_0007s04780 I 0.887
mgf013201m Mimulus guttatus mgf013201m I 0.887
GRMZM2G063522 Zea mays GRMZM2G063522 I 0.885
OMERI01G15210 Oryza meridionalis OMERI01G15210 I 0.885
OMERI01G15230 Oryza meridionalis OMERI01G15230 I 0.885
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.884
Aquca_016_00364 Aquilegia coerulea Aquca_016_00364 N 0.884
SapurV1A.2021s0010 Salix purpurea SapurV1A.2021s0010 I 0.884
PGSC0003DMG400019615 Solanum tuberosum PGSC0003DMG400019615 I 0.883
Solyc11g068750.1 Solanum lycopersicum Solyc11g068750.1 I 0.883
BGIOSGA001578 Oryza indica BGIOSGA001578 I 0.881
BGIOSGA002597 Oryza indica BGIOSGA002597 I 0.881
OBART01G00360 Oryza barthii OBART01G00360 I 0.881
OBART01G16620 Oryza barthii OBART01G16620 I 0.881
OGLUM01G00350 Oryza glumaepatula OGLUM01G00350 I 0.881
OGLUM01G19440 Oryza glumaepatula OGLUM01G19440 I 0.881
OLONG_022415 Oryza longistaminata OLONG_022415 I 0.881
ONIVA01G00280 Oryza nivara ONIVA01G00280 I 0.881
ONIVA01G18370 Oryza nivara ONIVA01G18370 I 0.881
ORGLA12G0187900 Oryza glaberrima ORGLA12G0187900 I 0.881
ORUFI01G00320 Oryza rufipogon ORUFI01G00320 I 0.881
ORUFI01G18470 Oryza rufipogon ORUFI01G18470 I 0.881
OS01G0393100 Oryza sativa OS01G0393100 I 0.881
Solyc06g074170.2 Solanum lycopersicum Solyc06g074170.2 I 0.881
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.881
Bo3g016820 Brassica oleracea Bo3g016820 I 0.878
Bra006619 Brassica rapa Bra006619 I 0.878
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I 0.877
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I 0.876
Pavir.J36955 Panicum virgatum Pavir.J36955 I 0.876
AMTR_s00017p00255350 Amborella trichopoda AMTR_s00017p00255350 I 0.874
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.874
BRADI1G32660 Brachypodium distachyon BRADI1G32660 I 0.871
Carubv10019187m.g Capsella rubella Carubv10019187m.g N 0.871