CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J04666
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.J04666
T298935_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC025
M02368_2.00
Arabidopsis thaliana
YACGYAAY
RTTRCGTR
PBM
Weirauch et al.(2014)
pTH7656
0.879
0.693
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J04666.1.p
NAC/NAM
18
142
PPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGTREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
337 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_01923
Aegilops tauschii
F775_01923
I
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
TCP1
Arabidopsis thaliana
AT1G67260
D
BRC2
Arabidopsis thaliana
AT1G68800
I
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
Bo2g055640
Brassica oleracea
Bo2g055640
I
Bo2g061250
Brassica oleracea
Bo2g061250
I
Bo6g099040
Brassica oleracea
Bo6g099040
I
Bo6g103670
Brassica oleracea
Bo6g103670
I
Bra004097
Brassica rapa
Bra004097
I
Bra004212
Brassica rapa
Bra004212
I
Bra034010
Brassica rapa
Bra034010
I
Bra038350
Brassica rapa
Bra038350
I
PK12240.1
Cannabis sativa
PK12240.1
D
PK19717.1
Cannabis sativa
PK19717.1
D
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
Cla002355
Citrullus lanatus
Cla002355
I
Cla007227
Citrullus lanatus
Cla007227
I
Cla016709
Citrullus lanatus
Cla016709
I
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
Cucsa.031600
Cucumis sativus
Cucsa.031600
I
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
Eucgr.J01466
Eucalyptus grandis
Eucgr.J01466
I
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
GLYMA05G07943
Glycine max
GLYMA05G07943
I
GLYMA08G28691
Glycine max
GLYMA08G28691
I
GLYMA10G39141
Glycine max
GLYMA10G39141
I
GLYMA13G07475
Glycine max
GLYMA13G07475
I
GLYMA17G13065
Glycine max
GLYMA17G13065
I
GLYMA18G51581
Glycine max
GLYMA18G51581
I
GLYMA19G05921
Glycine max
GLYMA19G05921
I
GLYMA20G28670
Glycine max
GLYMA20G28670
I
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
MLOC_4614
Hordeum vulgare
MLOC_4614
I
MLOC_58142
Hordeum vulgare
MLOC_58142
I
MLOC_70116
Hordeum vulgare
MLOC_70116
I
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
Lus10003078.g
Linum usitatissimum
Lus10003078.g
I
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
Lus10034072.g
Linum usitatissimum
Lus10034072.g
I
chr1.LjB10L14.10.nc
Lotus japonicus
chr1.LjB10L14.10.nc
I
chr2.LjB17A04.40.nc
Lotus japonicus
chr2.LjB17A04.40.nc
I
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
chr5.CM0357.550.nc
Lotus japonicus
chr5.CM0357.550.nc
I
MDP0000173048
Malus domestica
MDP0000173048
I
MDP0000272980
Malus domestica
MDP0000272980
I
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
MTR_1g103380
Medicago truncatula
MTR_1g103380
I
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
MTR_6g017055
Medicago truncatula
MTR_6g017055
I
MTR_7g018500
Medicago truncatula
MTR_7g018500
I
mgf019480m
Mimulus guttatus
mgf019480m
I
mgf022233m
Mimulus guttatus
mgf022233m
I
mgf026636m
Mimulus guttatus
mgf026636m
I
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
OBART03G31290
Oryza barthii
OBART03G31290
I
OBART09G10040
Oryza barthii
OBART09G10040
I
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
TB1
Oryza sativa
OS03G0706500
D
OS09G0410500
Oryza sativa
OS09G0410500
I
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
Pm015499
Prunus mume
Pm015499
I
Pm029002
Prunus mume
Pm029002
I
Pm030202
Prunus mume
Pm030202
I
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
29738.m001041
Ricinus communis
29738.m001041
I
30167.m000856
Ricinus communis
30167.m000856
I
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
Si015230m.g
Setaria italica
Si015230m.g
I
Si033183m.g
Setaria italica
Si033183m.g
I
Si038692m.g
Setaria italica
Si038692m.g
I
Solyc03g119770.2
Solanum lycopersicum
Solyc03g119770.2
I
Solyc04g006980.1
Solanum lycopersicum
Solyc04g006980.1
I
Solyc05g009900.1
Solanum lycopersicum
Solyc05g009900.1
I
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
PGSC0003DMG400000823
Solanum tuberosum
PGSC0003DMG400000823
I
PGSC0003DMG400003362
Solanum tuberosum
PGSC0003DMG400003362
I
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
PGSC0003DMG400007467
Solanum tuberosum
PGSC0003DMG400007467
I
Sb01g010690
Sorghum bicolor
Sb01g010690
I
Sb02g024450
Sorghum bicolor
Sb02g024450
I
Sb07g021140
Sorghum bicolor
Sb07g021140
I
TCM_011874
Theobroma cacao
TCM_011874
I
TCM_012252
Theobroma cacao
TCM_012252
I
TCM_019518
Theobroma cacao
TCM_019518
I
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
BRC2
Vitis vinifera
VIT_01s0011g02920
I
TCP1
Vitis vinifera
VIT_14s0083g00150
I
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
GRMZM2G031905
Zea mays
GRMZM2G031905
I
GRMZM2G060319
Zea mays
GRMZM2G060319
I
GRMZM2G062711
Zea mays
GRMZM2G062711
I
GRMZM2G064628
Zea mays
GRMZM2G064628
I
GRMZM2G110242
Zea mays
GRMZM2G110242
I
GRMZM2G166687
Zea mays
GRMZM2G166687
I