Pavir.J13094 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J13094 T298963_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC087
M07232_2.00 		Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA		 Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a 		0.900 0.798
ANAC087
M07233_2.00 		Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a 		0.900 0.798
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13094.1.p NAC/NAM 21 146

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA027691 Oryza indica BGIOSGA027691 N
BRADI3G14590 Brachypodium distachyon BRADI3G14590 N
chr3.CM0155.80.nd Lotus japonicus chr3.CM0155.80.nd N
F775_31340 Aegilops tauschii F775_31340 N
Gorai.007G314800 Gossypium raimondii Gorai.007G314800 N
GRMZM2G017586 Zea mays GRMZM2G017586 N
GRMZM2G093744 Zea mays GRMZM2G093744 N
GRMZM2G314882 Zea mays GRMZM2G314882 N
GRMZM5G856837 Zea mays GRMZM5G856837 N
GSMUA_Achr11G14790_001 Musa acuminata GSMUA_Achr11G14790_001 I
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I
mgf009119m Mimulus guttatus mgf009119m I
MLOC_6315 Hordeum vulgare MLOC_6315 N
OB08G12550 Oryza brachyantha OB08G12550 N
OGLUM08G02420 Oryza glumaepatula OGLUM08G02420 N
OLONG_003616 Oryza longistaminata OLONG_003616 N
ONIVA08G02550 Oryza nivara ONIVA08G02550 N
OPUNC08G02220 Oryza punctata OPUNC08G02220 N
ORGLA08G0018000 Oryza glaberrima ORGLA08G0018000 N
ORUFI08G02650 Oryza rufipogon ORUFI08G02650 N
OS08G0138500 Oryza sativa OS08G0138500 N
Pavir.Fa02284 Panicum virgatum Pavir.Fa02284 N
Pavir.Fb00223 Panicum virgatum Pavir.Fb00223 N
Pavir.J05070 Panicum virgatum Pavir.J05070 N
Pavir.J34678 Panicum virgatum Pavir.J34678 N
Sb04g001200 Sorghum bicolor Sb04g001200 N
Sb07g002900 Sorghum bicolor Sb07g002900 N
Si014339m.g Setaria italica Si014339m.g N
Traes_7AL_B9345EB83 Triticum aestivum Traes_7AL_B9345EB83 N
Traes_7BL_6324A95B5 Triticum aestivum Traes_7BL_6324A95B5 N
Traes_7DL_88B60203A Triticum aestivum Traes_7DL_88B60203A N
TRIUR3_32784 Triticum urartu TRIUR3_32784 N