CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J20890
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.J20890
T298978_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J20890.1.p
NAC/NAM
14
157
PPGFRFHPTEEELVGYYLARKVAAQKIDLDIIREVDLYRIEPWDLQERCCIYYGGAGTGSGGQEEEPTEYYFFSYKDRKYPSGTRTNRATAAGFWKATGRDKPVLSSRSAAPLSVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL
Pavir.J20890.2.p
NAC/NAM
14
157
PPGFRFHPTEEELVGYYLARKVAAQKIDLDIIREVDLYRIEPWDLQERCCIYYGGAGTGSGGQEEEPTEYYFFSYKDRKYPSGTRTNRATAAGFWKATGRDKPVLSSRSAAPLSVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL
Pavir.J20890.3.p
NAC/NAM
14
157
PPGFRFHPTEEELVGYYLARKVAAQKIDLDIIREVDLYRIEPWDLQERCCIYYGGAGTGSGGQEEEPTEYYFFSYKDRKYPSGTRTNRATAAGFWKATGRDKPVLSSRSAAPLSVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC212859.3_FG008
Zea mays
AC212859.3_FG008
N
0.941
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.876
BGIOSGA014649
Oryza indica
BGIOSGA014649
I
0.879
BGIOSGA022108
Oryza indica
BGIOSGA022108
I
0.874
BGIOSGA027807
Oryza indica
BGIOSGA027807
N
0.915
BRADI1G52187
Brachypodium distachyon
BRADI1G52187
I
0.899
BRADI3G13117
Brachypodium distachyon
BRADI3G13117
N
0.917
BRADI5G27467
Brachypodium distachyon
BRADI5G27467
N
0.945
e_gw1.70.85.1
Physcomitrella patens
e_gw1.70.85.1
N
0.895
F775_00942
Aegilops tauschii
F775_00942
N
0.953
F775_07224
Aegilops tauschii
F775_07224
I
0.899
F775_12735
Aegilops tauschii
F775_12735
N
0.945
F775_16517
Aegilops tauschii
F775_16517
N
0.945
F775_52611
Aegilops tauschii
F775_52611
N
0.936
GRMZM2G041668
Zea mays
GRMZM2G041668
I
0.889
GRMZM2G048826
Zea mays
GRMZM2G048826
N
0.962
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.919
GRMZM2G178998
Zea mays
GRMZM2G178998
I
0.877
GRMZM2G354151
Zea mays
GRMZM2G354151
I
0.872
GRMZM2G440219
Zea mays
GRMZM2G440219
I
0.889
GSMUA_Achr3G22360_001
Musa acuminata
GSMUA_Achr3G22360_001
N
0.904
GSMUA_Achr8G11590_001
Musa acuminata
GSMUA_Achr8G11590_001
I
0.873
LPERR04G16200
Leersia perrieri
LPERR04G16200
I
0.879
LPERR06G00240
Leersia perrieri
LPERR06G00240
I
0.884
LPERR08G00380
Leersia perrieri
LPERR08G00380
N
0.934
MLOC_19933
Hordeum vulgare
MLOC_19933
N
0.957
MLOC_53086
Hordeum vulgare
MLOC_53086
I
0.899
MLOC_66083
Hordeum vulgare
MLOC_66083
N
0.942
MLOC_67250
Hordeum vulgare
MLOC_67250
N
0.939
OB04G27030
Oryza brachyantha
OB04G27030
I
0.879
OB06G10310
Oryza brachyantha
OB06G10310
I
0.874
OB08G10370
Oryza brachyantha
OB08G10370
N
0.929
OBART04G20020
Oryza barthii
OBART04G20020
I
0.879
OBART06G00240
Oryza barthii
OBART06G00240
I
0.874
OBART08G00290
Oryza barthii
OBART08G00290
N
0.915
OGLUM04G19900
Oryza glumaepatula
OGLUM04G19900
I
0.879
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.876
OGLUM06G00210
Oryza glumaepatula
OGLUM06G00210
I
0.874
OGLUM08G00350
Oryza glumaepatula
OGLUM08G00350
N
0.927
OMERI03G30800
Oryza meridionalis
OMERI03G30800
I
0.879
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.885
OMERI06G00230
Oryza meridionalis
OMERI06G00230
I
0.874
OMERI08G00600
Oryza meridionalis
OMERI08G00600
N
0.934
ONIVA04G18230
Oryza nivara
ONIVA04G18230
I
0.879
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.876
ONIVA06G00260
Oryza nivara
ONIVA06G00260
I
0.874
ONIVA08G00280
Oryza nivara
ONIVA08G00280
N
0.915
OPUNC04G17680
Oryza punctata
OPUNC04G17680
I
0.879
OPUNC06G00220
Oryza punctata
OPUNC06G00220
I
0.874
OPUNC08G00360
Oryza punctata
OPUNC08G00360
N
0.929
ORGLA04G0171200
Oryza glaberrima
ORGLA04G0171200
I
0.879
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.876
ORGLA06G0002300
Oryza glaberrima
ORGLA06G0002300
I
0.874
ORUFI04G21580
Oryza rufipogon
ORUFI04G21580
I
0.879
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.876
ORUFI06G00250
Oryza rufipogon
ORUFI06G00250
I
0.874
ORUFI08G00330
Oryza rufipogon
ORUFI08G00330
N
0.927
OS04G0536500
Oryza sativa
OS04G0536500
I
0.879
OS04G0691300
Oryza sativa
OS04G0691300
I
0.876
OS06G0104200
Oryza sativa
OS06G0104200
I
0.874
OS08G0103900
Oryza sativa
OS08G0103900
N
0.929
Pavir.Da02426
Panicum virgatum
Pavir.Da02426
I
0.894
Pavir.Gb00744
Panicum virgatum
Pavir.Gb00744
I
0.877
Pavir.J07126
Panicum virgatum
Pavir.J07126
I
0.877
Pavir.J26987
Panicum virgatum
Pavir.J26987
I
0.894
Pavir.J31179
Panicum virgatum
Pavir.J31179
N
0.972
Sb06g023780
Sorghum bicolor
Sb06g023780
I
0.871
Sb06g034010
Sorghum bicolor
Sb06g034010
N
0.945
Sb07g000470
Sorghum bicolor
Sb07g000470
N
0.960
Sb10g000460
Sorghum bicolor
Sb10g000460
I
0.894
SELMODRAFT_402243
Selaginella moellendorffii
SELMODRAFT_402243
I
0.910
SELMODRAFT_408624
Selaginella moellendorffii
SELMODRAFT_408624
I
0.910
Si006829m.g
Setaria italica
Si006829m.g
I
0.889
Si010504m.g
Setaria italica
Si010504m.g
I
0.877
Si014149m.g
Setaria italica
Si014149m.g
N
0.962
Traes_2AL_8EE7F34F6
Triticum aestivum
Traes_2AL_8EE7F34F6
N
0.945
Traes_2AL_C0670BBDD
Triticum aestivum
Traes_2AL_C0670BBDD
N
0.943
Traes_2AL_CB84F42D2
Triticum aestivum
Traes_2AL_CB84F42D2
N
0.950
Traes_2AL_F001B4F26
Triticum aestivum
Traes_2AL_F001B4F26
N
0.947
Traes_2BL_0AED4E377
Triticum aestivum
Traes_2BL_0AED4E377
N
0.945
Traes_2BL_CBFB7D720
Triticum aestivum
Traes_2BL_CBFB7D720
N
0.942
Traes_2DL_607AD3522
Triticum aestivum
Traes_2DL_607AD3522
N
0.945
Traes_4AL_F853C8660
Triticum aestivum
Traes_4AL_F853C8660
I
0.899
Traes_7AS_6398221B7
Triticum aestivum
Traes_7AS_6398221B7
I
0.899
Traes_7DL_DF64397D7
Triticum aestivum
Traes_7DL_DF64397D7
N
0.953
Traes_7DS_7F0AF83B0
Triticum aestivum
Traes_7DS_7F0AF83B0
I
0.899
TRIUR3_06372
Triticum urartu
TRIUR3_06372
N
0.925
TRIUR3_08851
Triticum urartu
TRIUR3_08851
I
0.899
TRIUR3_10969
Triticum urartu
TRIUR3_10969
N
0.941
TRIUR3_10971
Triticum urartu
TRIUR3_10971
N
0.923
TRIUR3_24878
Triticum urartu
TRIUR3_24878
N
0.945
TRIUR3_24879
Triticum urartu
TRIUR3_24879
N
0.875