CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CRE00809
(
Caenorhabditis remanei
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CRE00809
T302038_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.929
0.571
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.882
0.471
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE00809
Nuclear receptor
19
88
SICHICSDVATGRHYGAIACNGCKGFFRRTVRRNYDYHCRFESKCEIDKHNRAVCRYCRFMKCIASGMRD
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis remanei
TFs
225 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_30082
Aegilops tauschii
F775_30082
I
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
AMTR_s00018p00074980
Amborella trichopoda
AMTR_s00018p00074980
I
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
NAC69
Arabidopsis thaliana
AT4G01550
D
Bostr.0556s0555
Boechera stricta
Bostr.0556s0555
I
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
BRADI1G52480
Brachypodium distachyon
BRADI1G52480
N
BRADI3G16480
Brachypodium distachyon
BRADI3G16480
I
BRADI4G34022
Brachypodium distachyon
BRADI4G34022
I
Bo5g002850
Brassica oleracea
Bo5g002850
I
Bo5g002860
Brassica oleracea
Bo5g002860
N
Bo9g004070
Brassica oleracea
Bo9g004070
I
Bra008553
Brassica rapa
Bra008553
I
Bra033296
Brassica rapa
Bra033296
I
Bra036328
Brassica rapa
Bra036328
I
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
evm.TU.supercontig_3.170
Carica papaya
evm.TU.supercontig_3.170
N
Ca_04069
Cicer arietinum
Ca_04069
I
Ca_20988
Cicer arietinum
Ca_20988
I
Ca_27204
Cicer arietinum
Ca_27204
I
Cla002432
Citrullus lanatus
Cla002432
N
Cucsa.273280
Cucumis sativus
Cucsa.273280
N
Eucgr.G01067
Eucalyptus grandis
Eucgr.G01067
N
Eucgr.G01548
Eucalyptus grandis
Eucgr.G01548
N
Eucgr.G01550
Eucalyptus grandis
Eucgr.G01550
N
Eucgr.I02571
Eucalyptus grandis
Eucgr.I02571
N
Eucgr.J00531
Eucalyptus grandis
Eucgr.J00531
I
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
Thhalv10007665m.g
Eutrema salsugineum
Thhalv10007665m.g
I
gene08448-v1.0-hybrid
Fragaria vesca
gene08448-v1.0-hybrid
I
GLYMA12G31211
Glycine max
GLYMA12G31211
I
GLYMA14G36840
Glycine max
GLYMA14G36840
I
Gorai.004G125900
Gossypium raimondii
Gorai.004G125900
I
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
Gorai.007G017500
Gossypium raimondii
Gorai.007G017500
I
Gorai.009G083500
Gossypium raimondii
Gorai.009G083500
N
MLOC_37843
Hordeum vulgare
MLOC_37843
I
MLOC_50406
Hordeum vulgare
MLOC_50406
I
MLOC_75297
Hordeum vulgare
MLOC_75297
N
LPERR08G03510
Leersia perrieri
LPERR08G03510
I
Lus10015587.g
Linum usitatissimum
Lus10015587.g
I
chr1.LjT41E18.160.nc
Lotus japonicus
chr1.LjT41E18.160.nc
I
MDP0000206868
Malus domestica
MDP0000206868
I
MDP0000282616
Malus domestica
MDP0000282616
I
MDP0000907489
Malus domestica
MDP0000907489
N
cassava11768.valid.m1
Manihot esculenta
cassava11768.valid.m1
N
MTR_3g093050
Medicago truncatula
MTR_3g093050
I
MTR_5g069030
Medicago truncatula
MTR_5g069030
I
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
MTR_8g023880
Medicago truncatula
MTR_8g023880
N
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
mgf015836m
Mimulus guttatus
mgf015836m
I
mgf022344m
Mimulus guttatus
mgf022344m
I
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
GSMUA_Achr1G03560_001
Musa acuminata
GSMUA_Achr1G03560_001
I
GSMUA_Achr2G11810_001
Musa acuminata
GSMUA_Achr2G11810_001
I
GSMUA_Achr3G00330_001
Musa acuminata
GSMUA_Achr3G00330_001
I
GSMUA_Achr4G29170_001
Musa acuminata
GSMUA_Achr4G29170_001
I
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
OBART06G00060
Oryza barthii
OBART06G00060
N
OBART08G03460
Oryza barthii
OBART08G03460
I
OB08G13730
Oryza brachyantha
OB08G13730
I
ORGLA06G0000500
Oryza glaberrima
ORGLA06G0000500
N
ORGLA08G0029000
Oryza glaberrima
ORGLA08G0029000
I
OGLUM06G00040
Oryza glumaepatula
OGLUM06G00040
N
OGLUM08G03540
Oryza glumaepatula
OGLUM08G03540
I
BGIOSGA022116
Oryza indica
BGIOSGA022116
N
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
OLONG_000105
Oryza longistaminata
OLONG_000105
I
OLONG_004904
Oryza longistaminata
OLONG_004904
N
OMERI06G00050
Oryza meridionalis
OMERI06G00050
N
OMERI08G03500
Oryza meridionalis
OMERI08G03500
I
ONIVA06G00080
Oryza nivara
ONIVA06G00080
N
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
OPUNC06G00030
Oryza punctata
OPUNC06G00030
N
OPUNC08G03310
Oryza punctata
OPUNC08G03310
I
ORUFI06G00070
Oryza rufipogon
ORUFI06G00070
N
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
OS06G0101800
Oryza sativa
OS06G0101800
N
OS08G0157900
Oryza sativa
OS08G0157900
I
Pavir.Fa01901
Panicum virgatum
Pavir.Fa01901
I
Pavir.Fb00405
Panicum virgatum
Pavir.Fb00405
I
POPTR_0002s15560
Populus trichocarpa
POPTR_0002s15560
I
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
POPTR_0012s00760
Populus trichocarpa
POPTR_0012s00760
N
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
POPTR_0015s00640
Populus trichocarpa
POPTR_0015s00640
N
Pm019659
Prunus mume
Pm019659
I
Pm028711
Prunus mume
Pm028711
I
Pm028712
Prunus mume
Pm028712
N
PRUPE_ppa016876mg
Prunus persica
PRUPE_ppa016876mg
N
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
PRUPE_ppa022384mg
Prunus persica
PRUPE_ppa022384mg
I
PRUPE_ppb017658mg
Prunus persica
PRUPE_ppb017658mg
I
29764.m000758
Ricinus communis
29764.m000758
N
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
SapurV1A.0326s0320
Salix purpurea
SapurV1A.0326s0320
N
SapurV1A.0586s0170
Salix purpurea
SapurV1A.0586s0170
I
Si006105m.g
Setaria italica
Si006105m.g
N
Si013369m.g
Setaria italica
Si013369m.g
I
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
Solyc06g073050.2
Solanum lycopersicum
Solyc06g073050.2
N
Solyc06g074170.2
Solanum lycopersicum
Solyc06g074170.2
I
Solyc11g068750.1
Solanum lycopersicum
Solyc11g068750.1
I
PGSC0003DMG400000555
Solanum tuberosum
PGSC0003DMG400000555
I
PGSC0003DMG400005892
Solanum tuberosum
PGSC0003DMG400005892
I
PGSC0003DMG400019615
Solanum tuberosum
PGSC0003DMG400019615
I
PGSC0003DMG402027023
Solanum tuberosum
PGSC0003DMG402027023
N
Sb07g003900
Sorghum bicolor
Sb07g003900
I
Sb10g000101
Sorghum bicolor
Sb10g000101
N
TCM_015535
Theobroma cacao
TCM_015535
I
TCM_041332
Theobroma cacao
TCM_041332
N
Traes_4AL_22CE41C6F
Triticum aestivum
Traes_4AL_22CE41C6F
N
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
Traes_7AL_669D4AE47
Triticum aestivum
Traes_7AL_669D4AE47
I
Traes_7BL_0C386426A
Triticum aestivum
Traes_7BL_0C386426A
I
Traes_7DL_AB67A0B36
Triticum aestivum
Traes_7DL_AB67A0B36
I
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
TRIUR3_32613
Triticum urartu
TRIUR3_32613
I
VIT_15s0048g02280
Vitis vinifera
VIT_15s0048g02280
N
VIT_15s0048g02300
Vitis vinifera
VIT_15s0048g02300
N
VIT_15s0048g02320
Vitis vinifera
VIT_15s0048g02320
I
GRMZM2G003715
Zea mays
GRMZM2G003715
I
GRMZM2G163914
Zea mays
GRMZM2G163914
N
GRMZM2G459156
Zea mays
GRMZM2G459156
N